1 HAMP#1
285-354 aa · 70 aa · 12.1% of protein
Raw token
HAMP:285:0.00000000000000115:354:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT593_RS00980
Histidine kinase, Classic
Dorea longicatena · GCF_009875695
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875695#GT593_RS00980Stable P2CS identifier used across views.
GenomeGCF_009875695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 577 aa (44.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 His_kinase#2
369-446 aa · 78 aa · 13.5% of protein
Raw token
His_kinase:369:1.63e-26:446:78:803 HATPase_c#3
465-571 aa · 107 aa · 18.5% of protein
Raw token
HATPase_c:465:0.00000000000787:571:111:109- Raw architecture: HAMP:285:0.00000000000000115:354:70:69#His_kinase:369:1.63e-26:446:78:80#HATPase_c:465:0.00000000000787:571:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875695::NZ_WWSD01000001.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span203888-207270Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT593_00985RefSeq proteinWP_130096180.1
Context group ID
GCF_009875695::NZ_WWSD01000001.1::G00018Context members
GT593_RS00980GT593_RS00985
Partner locus tags
GT593_RS00980GT593_RS00985
Partner old locus tags
GT593_00985GT593_00990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_130096180.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8RYH0Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8RYH0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT593_RS00980Primary locus identifier stored in the genes table.
Old locus tagGT593_00985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSD01000001.1Sequence record reported by the local genomic context database.
Genomic interval203 888-205 621 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span203 888-207 270 ntGCF_009875695::NZ_WWSD01000001.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875695::NZ_WWSD01000001.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span203 888-207 270 nt3 383 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
203 888 nt207 270 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT593_RS00980GCF_009875695#GT593_RS00980
HKClassicCurrent focus
203 888-205 621 nt · Forward (+)
GT593_RS00985GCF_009875695#GT593_RS00985
RRunclassified
205 618-207 270 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004167275#EAI84_RS00345Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1178658
Simplified PFAM architecture for HKOC_1178658
PFAM domain coverage: 236 / 577 aa (40.9%)
1 aa577 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[303-354] | His_kinase[369-446] | HATPase_c[465-570]
- Domain count: 3
- Matched identifier: HKOC_1178658
- Positioned domains: HAMP 303-354 ; His_kinase 369-446 ; HATPase_c 465-570
Cluster members and taxonomy
Representative gene: GCF_004167275#EAI84_RS00345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875695
AssemblyASM987569v1 · Scaffoldhaploid
Genome composition3 122 554 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key