1 HAMP#1
184-253 aa · 70 aa · 14.1% of protein
Raw token
HAMP:184:9.32e-16:253:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT593_RS03820
Histidine kinase, Classic
Dorea longicatena · GCF_009875695
ClassHKTypeClassicLength497 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875695#GT593_RS03820Stable P2CS identifier used across views.
GenomeGCF_009875695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length497 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 497 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa497 aa
Domain-by-domain annotation3 items
2 HisKA#2
267-331 aa · 65 aa · 13.1% of protein
Raw token
HisKA:267:0.00000000000000132:331:65:643 HATPase_c#3
378-491 aa · 114 aa · 22.9% of protein
Raw token
HATPase_c:378:2.52e-31:491:114:109- Raw architecture: HAMP:184:9.32e-16:253:70:69#HisKA:267:0.00000000000000132:331:65:64#HATPase_c:378:2.52e-31:491:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875695::NZ_WWSD01000003.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span231827-234002Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT593_03830RefSeq proteinWP_055213948.1
Context group ID
GCF_009875695::NZ_WWSD01000003.1::G00038Context members
GT593_RS03820GT593_RS03825
Partner locus tags
GT593_RS03820GT593_RS03825
Partner old locus tags
GT593_03830GT593_03835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055213948.1Primary protein accession used for annex mappings.
UniProt accessionA0A173SV56Primary UniProt accession resolved in the annex database.
UniProt IDA0A173SV56_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT593_RS03820Primary locus identifier stored in the genes table.
Old locus tagGT593_03830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSD01000003.1Sequence record reported by the local genomic context database.
Genomic interval231 827-233 320 nt1 494 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span231 827-234 002 ntGCF_009875695::NZ_WWSD01000003.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875695::NZ_WWSD01000003.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span231 827-234 002 nt2 176 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 827 nt234 002 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT593_RS03820GCF_009875695#GT593_RS03820
HKClassicCurrent focus
231 827-233 320 nt · Forward (+)
GT593_RS03825GCF_009875695#GT593_RS03825
RROmpR
233 313-234 002 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405975#AQ988_RS06050Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1493424
Simplified PFAM architecture for HKOC_1493424
PFAM domain coverage: 229 / 497 aa (46.1%)
1 aa497 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[201-253] | HisKA[266-330] | HATPase_c[379-489]
- Domain count: 3
- Matched identifier: HKOC_1493424
- Positioned domains: HAMP 201-253 ; HisKA 266-330 ; HATPase_c 379-489
Cluster members and taxonomy
Representative gene: GCF_001405975#AQ988_RS06050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875695
AssemblyASM987569v1 · Scaffoldhaploid
Genome composition3 122 554 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key