1 Response_reg#1
28-112 aa · 85 aa · 35.6% of protein
Raw token
Response_reg:28:0.00000000000000383:112:89:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT593_RS02825
Response regulator LytTR family
Dorea longicatena · GCF_009875695
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009875695#GT593_RS02825Stable P2CS identifier used across views.
GenomeGCF_009875695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage148 / 239 aa (61.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-201 aa · 63 aa · 26.4% of protein
Raw token
LytTR:139:2.33e-18:201:63:98- Raw architecture: Response_reg:28:0.00000000000000383:112:89:111#LytTR:139:2.33e-18:201:63:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009875695::NZ_WWSD01000003.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27113-27832Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT593_02835RefSeq proteinWP_130096351.1
Context group ID
GCF_009875695::NZ_WWSD01000003.1::G00035Context members
GT593_RS02825
Partner locus tags
GT593_RS02825
Partner old locus tags
GT593_02835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_130096351.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8RXA2Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8RXA2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT593_RS02825Primary locus identifier stored in the genes table.
Old locus tagGT593_02835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSD01000003.1Sequence record reported by the local genomic context database.
Genomic interval27 113-27 832 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 113-27 832 ntGCF_009875695::NZ_WWSD01000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875695::NZ_WWSD01000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span27 113-27 832 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 113 nt27 832 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT593_RS02825GCF_009875695#GT593_RS02825
RRLytTRCurrent focus
27 113-27 832 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004167275#EAI84_RS02820Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0913832
Simplified PFAM architecture for RROC_0913832
PFAM domain coverage: 179 / 239 aa (74.9%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[26-115] | LytTR[139-227]
- Domain count: 2
- Matched identifier: RROC_0913832
- Positioned domains: Response_reg 26-115 ; Response_reg 26-115 ; LytTR 139-227 ; LytTR 139-227
Cluster members and taxonomy
Representative gene: GCF_004167275#EAI84_RS02820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875695
AssemblyASM987569v1 · Scaffoldhaploid
Genome composition3 122 554 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key