1 HisKA_3#1
242-309 aa · 68 aa · 15.5% of protein
Raw token
HisKA_3:242:1.05e-24:309:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT593_RS01235
Histidine kinase, Classic
Dorea longicatena · GCF_009875695
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875695#GT593_RS01235Stable P2CS identifier used across views.
GenomeGCF_009875695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 440 aa (34.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
349-431 aa · 83 aa · 18.9% of protein
Raw token
HATPase_c:349:0.000000000109:431:101:109- Raw architecture: HisKA_3:242:1.05e-24:309:68:68#HATPase_c:349:0.000000000109:431:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875695::NZ_WWSD01000001.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span260258-262244Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT593_01240RefSeq proteinWP_242654790.1
Context group ID
GCF_009875695::NZ_WWSD01000001.1::G00019Context members
GT593_RS01235GT593_RS01240
Partner locus tags
GT593_RS01235GT593_RS01240
Partner old locus tags
GT593_01240GT593_01245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242654790.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT593_RS01235Primary locus identifier stored in the genes table.
Old locus tagGT593_01240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSD01000001.1Sequence record reported by the local genomic context database.
Genomic interval260 258-261 580 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span260 258-262 244 ntGCF_009875695::NZ_WWSD01000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875695::NZ_WWSD01000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span260 258-262 244 nt1 987 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
260 258 nt262 244 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT593_RS01235GCF_009875695#GT593_RS01235
HKClassicCurrent focus
260 258-261 580 nt · Forward (+)
GT593_RS01240GCF_009875695#GT593_RS01240
RRNarL
261 573-262 244 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301325#G4332_RS06110Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2045335
Simplified PFAM architecture for HKOC_2045335
PFAM domain coverage: 118 / 443 aa (26.6%)
1 aa443 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[245-312] | HATPase_c[352-401]
- Domain count: 2
- Matched identifier: HKOC_2045335
- Positioned domains: HisKA_3 245-312 ; HATPase_c 352-401
Cluster members and taxonomy
Representative gene: GCF_013301325#G4332_RS06110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875695
AssemblyASM987569v1 · Scaffoldhaploid
Genome composition3 122 554 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key