1 Response_reg#1
3-113 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:3:1.12e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FNA57_RS02240
Response regulator OmpR family
Francisella tularensis · GCF_009814095
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009814095#FNA57_RS02240Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 228 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo HK/TM or TMPRED prediction matched this gene.
Transmembrane helicesUnavailableNo protein-feature prediction is available for this gene.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-219 aa · 68 aa · 29.8% of protein
Raw token
Trans_reg_C:152:5.52e-25:219:72:77- Raw architecture: Response_reg:3:1.12e-32:113:111:111#Trans_reg_C:152:5.52e-25:219:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No prediction source loaded
- TMPRED segments: N/A
- Complete: Yes
Protein sequence
On-demand local amino-acid sequence in FASTA format
Protein sequence
On-demand local amino-acid sequence in FASTA format
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009814095::NZ_VJBX01000009.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span26854-27540Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFNA57_02255RefSeq proteinWP_010032924.1
Context group ID
GCF_009814095::NZ_VJBX01000009.1::G00002Context members
FNA57_RS02240
Partner locus tags
FNA57_RS02240
Partner old locus tags
FNA57_02255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_010032924.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI8BI09Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI8BI09_FRATHDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFNA57_RS02240Primary locus identifier stored in the genes table.
Old locus tagFNA57_02255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VJBX01000009.1Sequence record reported by the local genomic context database.
Genomic interval26 854-27 540 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 854-27 540 ntGCF_009814095::NZ_VJBX01000009.1::G00002
Quick actions
Genome neighborhood
Gene-centered window parsed directly from the configured gzipped GFF annotation
GCF_009814095 · NZ_VJBX01000009.1Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Centered locusFNA57_RS0224011 genes displayed around the current focus.
Configured flank5 upstream / downstreamWindow size loaded from config.ini.
Annotation sourceGCF_009814095.gff.gzResolved as <gff_root_dir>/<genome_id>/<genome_id>.gff.gz when available.
View modeGene-centered orderThis track keeps the current gene in the middle of the context window when possible.
Gene-centered contextFive upstream and five downstream genes can be shown when the configured flank count is set to 5.
Current geneHKRROther P2CSOutside P2CS
1
FNA57_RS02210FNA57_RS02210
2
FNA57_RS02215waaA
3
FNA57_RS02220rdgB
4
FNA57_RS02225proC
5
FNA57_RS02235FNA57_RS02235
7
FNA57_RS02245lepB
8
FNA57_RS02250rnc
9
FNA57_RS02255truB
10
FNA57_RS02260rnr
11
FNA57_RS02265FNA57_RS02265
Neighborhood gene cards
11 genes in the current genome window.
FNA57_RS02210FNA57_RS02210
Outside P2CS
21 309-22 190 nt · 882 nt · Reverse (-)
polyprenyl synthetase family protein
FNA57_RS02215waaA
Outside P2CS
22 187-23 482 nt · 1 296 nt · Reverse (-)
lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase
FNA57_RS02220rdgB
Outside P2CS
23 587-24 165 nt · 579 nt · Reverse (-)
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
FNA57_RS02225proC
Outside P2CS
24 272-25 096 nt · 825 nt · Forward (+)
pyrroline-5-carboxylate reductase
FNA57_RS02235FNA57_RS02235
Outside P2CS
25 333-26 423 nt · 1 091 nt · Forward (+)
PrpF domain-containing protein
FNA57_RS02240qseB
RROmpRCurrent focus
26 854-27 540 nt · 687 nt · Forward (+)
response regulator QseB
FNA57_RS02245lepB
Outside P2CS
27 545-28 408 nt · 864 nt · Forward (+)
signal peptidase I
FNA57_RS02250rnc
Outside P2CS
28 415-29 107 nt · 693 nt · Forward (+)
ribonuclease III
FNA57_RS02255truB
Outside P2CS
29 094-30 002 nt · 909 nt · Forward (+)
tRNA pseudouridine(55) synthase TruB
FNA57_RS02260rnr
Outside P2CS
29 995-32 247 nt · 2 253 nt · Forward (+)
ribonuclease R
FNA57_RS02265FNA57_RS02265
Outside P2CS
32 315-33 144 nt · 830 nt · Reverse (-)
acyl-CoA desaturase
3D Structure
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009245#FTL_RS02890Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1301545
Simplified PFAM architecture for RROC_1301545
PFAM domain coverage: 180 / 228 aa (78.9%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[152-220]
- Domain count: 2
- Matched identifier: RROC_1301545
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 152-220 ; Trans_reg_C 152-220
Cluster members and taxonomy
Representative gene: GCF_000009245#FTL_RS02890
Sankey plot built from the taxonomy of all members in the selected cluster.
Taxonomy Sankey will load when this section is visible.
Genome taxonomy
Francisella tularensis
Taxonomy recordFrancisella tularensisTaxon ID 263 · GCF_009814095
AssemblyASM981409v1 · Contighaploid
Genome composition1 789 751 bp · 32,0% GCGenome size and GC content from the linked genome record.
Signal transduction countsGenes 2 · HK 1 · RR 1CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path1 lineage nodes
1Unknown
Related genes
Preview from the same derived genome key