P2CS-Web

Francisella tularensis

Bacteria · Pseudomonadota · Gammaproteobacteria · Thiotrichales · Francisellaceae · Francisella

Strain: 06-1642

TCS census

Genome-level counts from the current P2CS annotation tables

All genes2Total predicted proteins linked to this genome record.

HK1Histidine kinase predictions in the genes table.

RR1Response regulator predictions in the genes table.

CheA0CheA-like kinase predictions in the genes table.

PP0Phosphatase predictions in the genes table.

Genome overview

Curated genome metadata from the imported catalog and Cheops-linked sources

Genome IDGCF_009814095Stable genome identifier used across P2CS views.

Genome nameFrancisella tularensisNCBI organism name imported through the genome catalogue.

Strain / isolate06-1642Infraspecific name when supplied by the source assembly metadata.

Taxon ID263NCBI taxonomic identifier linked to the imported genome catalog.

AssemblyASM981409v1 · ContigNo RefSeq category available for this record.

Composition1,79 Mb · 32,0% GCGenome size and GC content when available in the catalog.

External recordsPRJNA224116 · SAMN12159643Francisella tularensis

Taxonomy snapshotBacteria · Pseudomonadota · Gammaproteobacteria · Thiotrichales · Francisellaceae · FrancisellaUnknown

genome_ANI

ANI and taxonomy consistency checks

Taxonomy checkOK

Best-match statusderived-species-match

Best speciesFrancisella tularensis

Best type assemblyGCA_000153845.1

Best type categorytype

Best ANI99.84%

Best qcov98,7%

Best scov93,7%

Declared assemblyGCA_000153845.1

Declared organismFrancisella tularensis subsp. holarctica 257

Declared categorytype

Declared ANI99.84%

genome_checkM

Completeness and contamination estimates

Completeness98,7%

Contamination0,0%

Marker setFrancisella tularensis

genome_genbank

Assembly and annotation metadata

Organism nameFrancisella tularensis

Infraspecificstrain=06-1642

WGS masterVJBX00000000.1

Version statuslatest

Release typeMajor

Genome representationFull

Sequence release2019-12-31

SubmitterANSES

Groupbacteria

Ungapped size1 789 751

Replicons0

Scaffolds106

Contigs106

Annotation providerNCBI

Annotation nameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Annotation date2019-07-08

Total genes1913

Protein-coding1598

Non-coding47

Genome circular map

Circos-like overview of the selected replicon with central GC, strand-specific genes, zoomable coordinates, and TCS organization markers

GenomeGCF_009814095

RepliconNZ_VJBX01000001.1

Length87,6 kb

Tracks96 genes · 0 TCS

Replicon

Zoom

Genes on + strand Genes on - strand HK RR CheA PP/Hpt GC% GC skew Cumulative GC skew Composition baseline

Context Orphan (0) Pair (0) Triad (0) Tetrad (0) Pentad (0) Pentad+ (0) Not in context (0)

Linear chromosome and composition views

Linear overview of the selected replicon, with strand-separated genes and composition plots aligned on the same genomic coordinate system.

Genes on + strand Genes on - strand HK RR CheA PP/Hpt

Sources

GFF: GCF_009814095.gff.gz · Sequence: GCF_009814095.1_ASM981409v1_genomic.fna.gz

TCS Organization

Click a count to filter the gene list below

Orphan	Pair	Triad	Tetrad	Pentad	Pentad+	Not in context
2 (2 genes)	0 (0 gene)	0 (0 gene)	0 (0 gene)	0 (0 gene)	0 (0 gene)	0 (0 gene)

Not in context = predicted HK, RR, and PP genes missing from the TCS context database.

Gene distribution

Total proteins: 2

HK1proteins in this genome

P2CS Predicted Histidine Kinases

P2CS Predicted Histidine Kinases (1 proteins across 1 families) · Phylogenetic Tree · Data Heatmap

Genome total 1Database total 12 517 906Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

RR1proteins in this genome

P2CS Predicted Response Regulators

P2CS Predicted Response Regulators (1 proteins across 1 families) · Phylogenetic Tree · Data Heatmap

Genome total 1Database total 12 774 395Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

Family composition

Pie, bar, or treemap view for the current genome.

Genome vs database radar

Percent of each family in this genome compared with the whole P2CS database.

PP0proteins in this genome

P2CS Predicted PP / Hpt Proteins

P2CS Predicted PP / Hpt Proteins (0 proteins across 0 families) · Phylogenetic Tree · Data Heatmap

Genome total 0Database total 0Click counts to filter the genome gene list

Family distribution

Genome composition on the right, clickable family counts on the left, and a genome-vs-database radar plot.

No pp / hpt proteins were predicted for this genome.

P2CS shortcuts

Classic entry points plus a collapsible genome protein list at the end of the page

All genes HK RR CheA PP Orphan Pair Triad Pentad+

Genome proteins

Full genome protein list with the same filters, grouped contexts, and links to the browser or gene detail pages.

Open this section to load the genome protein list.

Selected gene

Inline mode is active

Choose a gene from the list above to display its details below the genome sheet.