1 HAMP#1
140-207 aa · 68 aa · 15.2% of protein
Raw token
HAMP:140:0.0000000262:207:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GQL87_RS04345
Histidine kinase, Classic
Escherichia coli · GCF_009794485
ClassHKTypeClassicLength447 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009794485#GQL87_RS04345Stable P2CS identifier used across views.
GenomeGCF_009794485Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length447 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 447 aa (52.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa447 aa
Domain-by-domain annotation3 items
2 HisKA#2
211-269 aa · 59 aa · 13.2% of protein
Raw token
HisKA:211:0.000000000255:269:62:643 HATPase_c#3
316-423 aa · 108 aa · 24.2% of protein
Raw token
HATPase_c:316:2.79e-29:423:109:109- Raw architecture: HAMP:140:0.0000000262:207:72:69#HisKA:211:0.000000000255:269:62:64#HATPase_c:316:2.79e-29:423:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009794485::NZ_WTNO01000002.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span287128-289194Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGQL87_04345RefSeq proteinWP_160393265.1
Context group ID
GCF_009794485::NZ_WTNO01000002.1::G00026Context members
GQL87_RS04345GQL87_RS04350
Partner locus tags
GQL87_RS04345GQL87_RS04350
Partner old locus tags
GQL87_04345GQL87_04350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_160393265.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGQL87_RS04345Primary locus identifier stored in the genes table.
Old locus tagGQL87_04345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WTNO01000002.1Sequence record reported by the local genomic context database.
Genomic interval287 128-288 471 nt1 344 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span287 128-289 194 ntGCF_009794485::NZ_WTNO01000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009794485::NZ_WTNO01000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WTNO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span287 128-289 194 nt2 067 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
287 128 nt289 194 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GQL87_RS04345GCF_009794485#GQL87_RS04345
HKClassicCurrent focus
287 128-288 471 nt · Reverse (-)
GQL87_RS04350GCF_009794485#GQL87_RS04350
RROmpR
288 475-289 194 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009794485#GQL87_RS04345The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2003029
Simplified PFAM architecture for HKOC_2003029
PFAM domain coverage: 209 / 447 aa (46.8%)
1 aa447 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[163-206] | HisKA[212-270] | HATPase_c[318-423]
- Domain count: 3
- Matched identifier: HKOC_2003029
- Positioned domains: HAMP 163-206 ; HisKA 212-270 ; HATPase_c 318-423
Cluster members and taxonomy
Representative gene: GCF_009794485#GQL87_RS04345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_009794485
AssemblyASM979448v1 · Contighaploid
Genome composition5 030 893 bp · 51,0% GCEscherichia coli
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key