1 Response_reg#1
3-112 aa · 110 aa · 50.0% of protein
Raw token
Response_reg:3:3.73e-23:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS16295
Response regulator OmpR family
Roseburia faecis · GCF_009718405
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009718405#GMD29_RS16295Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 220 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.5% of protein
Raw token
Trans_reg_C:145:7.87e-27:220:77:77- Raw architecture: Response_reg:3:3.73e-23:112:111:111#Trans_reg_C:145:7.87e-27:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009718405::NZ_WNAK01000051.1::G00045
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6752-7414Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_16235RefSeq proteinWP_022045807.1
Context group ID
GCF_009718405::NZ_WNAK01000051.1::G00045Context members
GMD29_RS16295
Partner locus tags
GMD29_RS16295
Partner old locus tags
GMD29_16235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022045807.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KUX0Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KUX0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS16295Primary locus identifier stored in the genes table.
Old locus tagGMD29_16235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000051.1Sequence record reported by the local genomic context database.
Genomic interval6 752-7 414 nt663 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 752-7 414 ntGCF_009718405::NZ_WNAK01000051.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000051.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000051.1All displayed genes belong to this local TCS context.
Neighborhood span6 752-7 414 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 752 nt7 414 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GMD29_RS16295GCF_009718405#GMD29_RS16295
RROmpRCurrent focus
6 752-7 414 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS16295The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1736044
Simplified PFAM architecture for RROC_1736044
PFAM domain coverage: 185 / 220 aa (84.1%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1736044
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 145-220 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS16295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key