1 HD#1
117-240 aa · 124 aa · 25.9% of protein
Raw token
HD:117:2.09e-16:240:125:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS13335
Response regulator RpfG family
Roseburia faecis · GCF_009718405
ClassRRTypeRpfGLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009718405#GMD29_RS13335Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HDResponse_reg
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage227 / 479 aa (47.4%)Merged over positioned domains only.
Domain description1 HD,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation2 items
2 Response_reg#2
361-463 aa · 103 aa · 21.5% of protein
Raw token
Response_reg:361:1.81e-21:463:104:111- Raw architecture: HD:117:2.09e-16:240:125:110#Response_reg:361:1.81e-21:463:104:111
- Domain description: 1 HD,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009718405::NZ_WNAK01000027.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17296-21439Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_13310RefSeq proteinWP_155177249.1
Context group ID
GCF_009718405::NZ_WNAK01000027.1::G00024Context members
GMD29_RS13330GMD29_RS13335
Partner locus tags
GMD29_RS13330GMD29_RS13335
Partner old locus tags
GMD29_13305GMD29_13310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155177249.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KQH8Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KQH8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS13335Primary locus identifier stored in the genes table.
Old locus tagGMD29_13310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000027.1Sequence record reported by the local genomic context database.
Genomic interval20 000-21 439 nt1 440 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 296-21 439 ntGCF_009718405::NZ_WNAK01000027.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000027.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000027.1All displayed genes belong to this local TCS context.
Neighborhood span17 296-21 439 nt4 144 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 296 nt21 439 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GMD29_RS13330GCF_009718405#GMD29_RS13330
HKHybrid
17 296-19 992 nt · Reverse (-)
GMD29_RS13335GCF_009718405#GMD29_RS13335
RRRpfGCurrent focus
20 000-21 439 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS13335The current gene is the representative for this cluster.
PFAM architectureHD_5 + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0185180
Simplified PFAM architecture for RROC_0185180
PFAM domain coverage: 268 / 479 aa (55.9%)
1 aa479 aa
HD_5Response_reg
- Simplified architecture: HD_5 + Response_reg
- Raw architecture: HD_5[111-270] | Response_reg[361-468]
- Domain count: 2
- Matched identifier: RROC_0185180
- Positioned domains: HD_5 111-270 ; HD_5 111-270 ; Response_reg 361-468 ; Response_reg 361-468
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS13335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key