1 HisKA#1
125-192 aa · 68 aa · 19.3% of protein
Raw token
HisKA:125:0.000000000000024:192:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS13305
Histidine kinase, Classic
Roseburia faecis · GCF_009718405
ClassHKTypeClassicLength353 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009718405#GMD29_RS13305Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length353 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 353 aa (51.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa353 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
236-349 aa · 114 aa · 32.3% of protein
Raw token
HATPase_c:236:9.38e-26:349:114:109- Raw architecture: HisKA:125:0.000000000000024:192:68:64#HATPase_c:236:9.38e-26:349:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009718405::NZ_WNAK01000027.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10741-12518Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_13280RefSeq proteinWP_155177241.1
Context group ID
GCF_009718405::NZ_WNAK01000027.1::G00023Context members
GMD29_RS13300GMD29_RS13305
Partner locus tags
GMD29_RS13300GMD29_RS13305
Partner old locus tags
GMD29_13275GMD29_13280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155177241.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KPI3Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KPI3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS13305Primary locus identifier stored in the genes table.
Old locus tagGMD29_13280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000027.1Sequence record reported by the local genomic context database.
Genomic interval11 457-12 518 nt1 062 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 741-12 518 ntGCF_009718405::NZ_WNAK01000027.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000027.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000027.1All displayed genes belong to this local TCS context.
Neighborhood span10 741-12 518 nt1 778 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 741 nt12 518 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GMD29_RS13300GCF_009718405#GMD29_RS13300
RROmpR
10 741-11 460 nt · Reverse (-)
GMD29_RS13305GCF_009718405#GMD29_RS13305
HKClassicCurrent focus
11 457-12 518 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS13305The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2785715
Simplified PFAM architecture for HKOC_2785715
PFAM domain coverage: 280 / 353 aa (79.3%)
1 aa353 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[12-112] | HisKA[126-192] | HATPase_c[237-348]
- Domain count: 3
- Matched identifier: HKOC_2785715
- Positioned domains: DUF4118 12-112 ; HisKA 126-192 ; HATPase_c 237-348
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS13305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key