1 HisKA#1
236-302 aa · 67 aa · 14.6% of protein
Raw token
HisKA:236:0.0000000000000136:302:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS09765
Histidine kinase, Classic
Roseburia faecis · GCF_009718405
ClassHKTypeClassicLength460 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009718405#GMD29_RS09765Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length460 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 460 aa (35.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa460 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
348-443 aa · 96 aa · 20.9% of protein
Raw token
HATPase_c:348:0.0000000000000231:443:100:109- Raw architecture: HisKA:236:0.0000000000000136:302:67:64#HATPase_c:348:0.0000000000000231:443:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009718405::NZ_WNAK01000017.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34437-36515Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_09740RefSeq proteinWP_155176731.1
Context group ID
GCF_009718405::NZ_WNAK01000017.1::G00005Context members
GMD29_RS09765GMD29_RS09770
Partner locus tags
GMD29_RS09765GMD29_RS09770
Partner old locus tags
GMD29_09740GMD29_09745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155176731.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KR40Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KR40_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS09765Primary locus identifier stored in the genes table.
Old locus tagGMD29_09740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000017.1Sequence record reported by the local genomic context database.
Genomic interval34 437-35 819 nt1 383 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span34 437-36 515 ntGCF_009718405::NZ_WNAK01000017.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000017.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000017.1All displayed genes belong to this local TCS context.
Neighborhood span34 437-36 515 nt2 079 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 437 nt36 515 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GMD29_RS09765GCF_009718405#GMD29_RS09765
HKClassicCurrent focus
34 437-35 819 nt · Reverse (-)
GMD29_RS09770GCF_009718405#GMD29_RS09770
RROmpR
35 826-36 515 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS09765The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1837561
Simplified PFAM architecture for HKOC_1837561
PFAM domain coverage: 161 / 460 aa (35.0%)
1 aa460 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[237-302] | HATPase_c[349-443]
- Domain count: 2
- Matched identifier: HKOC_1837561
- Positioned domains: HisKA 237-302 ; HATPase_c 349-443
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS09765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key