1 Response_reg#1
5-114 aa · 110 aa · 71.0% of protein
Raw token
Response_reg:5:1.06e-39:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS07015
Response regulator, CheY family
Roseburia faecis · GCF_009718405
ClassRRTypeCheYLength155 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009718405#GMD29_RS07015Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length155 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 155 aa (71.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa155 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.06e-39:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009718405::NZ_WNAK01000011.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7918-9829Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_07000RefSeq proteinWP_330582998.1
Context group ID
GCF_009718405::NZ_WNAK01000011.1::G00002Context members
GMD29_RS07015GMD29_RS07020
Partner locus tags
GMD29_RS07015GMD29_RS07020
Partner old locus tags
GMD29_07000GMD29_07005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330582998.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS07015Primary locus identifier stored in the genes table.
Old locus tagGMD29_07000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000011.1Sequence record reported by the local genomic context database.
Genomic interval7 918-8 385 nt468 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 918-9 829 ntGCF_009718405::NZ_WNAK01000011.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000011.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000011.1All displayed genes belong to this local TCS context.
Neighborhood span7 918-9 829 nt1 912 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 918 nt9 829 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GMD29_RS07015GCF_009718405#GMD29_RS07015
RRCheYCurrent focus
7 918-8 385 nt · Forward (+)
GMD29_RS07020GCF_009718405#GMD29_RS07020
HKClassic
8 603-9 829 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS07015The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2216262
Simplified PFAM architecture for RROC_2216262
PFAM domain coverage: 109 / 155 aa (70.3%)
1 aa155 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-113]
- Domain count: 1
- Matched identifier: RROC_2216262
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS07015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key