1 Response_reg#1
3-115 aa · 113 aa · 47.7% of protein
Raw token
Response_reg:3:1.8e-16:115:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS05375
Response regulator LytTR family
Roseburia faecis · GCF_009718405
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009718405#GMD29_RS05375Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage205 / 237 aa (86.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 38.8% of protein
Raw token
LytTR:138:4.54e-20:229:97:98- Raw architecture: Response_reg:3:1.8e-16:115:115:111#LytTR:138:4.54e-20:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009718405::NZ_WNAK01000007.1::G00059
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span115016-115729Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_05360RefSeq proteinWP_155175556.1
Context group ID
GCF_009718405::NZ_WNAK01000007.1::G00059Context members
GMD29_RS05375
Partner locus tags
GMD29_RS05375
Partner old locus tags
GMD29_05360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155175556.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KK27Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KK27_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS05375Primary locus identifier stored in the genes table.
Old locus tagGMD29_05360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000007.1Sequence record reported by the local genomic context database.
Genomic interval115 016-115 729 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 016-115 729 ntGCF_009718405::NZ_WNAK01000007.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000007.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000007.1All displayed genes belong to this local TCS context.
Neighborhood span115 016-115 729 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 016 nt115 729 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GMD29_RS05375GCF_009718405#GMD29_RS05375
RRLytTRCurrent focus
115 016-115 729 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS05375The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0970883
Simplified PFAM architecture for RROC_0970883
PFAM domain coverage: 204 / 237 aa (86.1%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-115] | LytTR[139-229]
- Domain count: 2
- Matched identifier: RROC_0970883
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; LytTR 139-229 ; LytTR 139-229
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS05375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key