1 HAMP#1
176-247 aa · 72 aa · 14.5% of protein
Raw token
HAMP:176:0.0000000000024:247:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS04735
Histidine kinase, Classic
Roseburia faecis · GCF_009718405
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009718405#GMD29_RS04735Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 495 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 HisKA#2
272-339 aa · 68 aa · 13.7% of protein
Raw token
HisKA:272:0.0000000000000026:339:68:643 HATPase_c#3
384-491 aa · 108 aa · 21.8% of protein
Raw token
HATPase_c:384:1.05e-19:491:109:109- Raw architecture: HAMP:176:0.0000000000024:247:72:69#HisKA:272:0.0000000000000026:339:68:64#HATPase_c:384:1.05e-19:491:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009718405::NZ_WNAK01000006.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span89706-91874Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_04720RefSeq proteinWP_055068229.1
Context group ID
GCF_009718405::NZ_WNAK01000006.1::G00054Context members
GMD29_RS04735GMD29_RS04740
Partner locus tags
GMD29_RS04735GMD29_RS04740
Partner old locus tags
GMD29_04720GMD29_04725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055068229.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WUH2Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WUH2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS04735Primary locus identifier stored in the genes table.
Old locus tagGMD29_04720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000006.1Sequence record reported by the local genomic context database.
Genomic interval89 706-91 193 nt1 488 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span89 706-91 874 ntGCF_009718405::NZ_WNAK01000006.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000006.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000006.1All displayed genes belong to this local TCS context.
Neighborhood span89 706-91 874 nt2 169 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 706 nt91 874 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GMD29_RS04735GCF_009718405#GMD29_RS04735
HKClassicCurrent focus
89 706-91 193 nt · Reverse (-)
GMD29_RS04740GCF_009718405#GMD29_RS04740
RROmpR
91 194-91 874 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS10805Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504809
Simplified PFAM architecture for HKOC_1504809
PFAM domain coverage: 229 / 495 aa (46.3%)
1 aa495 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-247] | HisKA[272-337] | HATPase_c[384-492]
- Domain count: 3
- Matched identifier: HKOC_1504809
- Positioned domains: HAMP 194-247 ; HisKA 272-337 ; HATPase_c 384-492
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS10805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key