1 HAMP#1
178-252 aa · 75 aa · 15.0% of protein
Raw token
HAMP:178:3.28e-16:252:75:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS03505
Histidine kinase, Classic
Roseburia faecis · GCF_009718405
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009718405#GMD29_RS03505Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 501 aa (51.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation3 items
2 HisKA#2
263-330 aa · 68 aa · 13.6% of protein
Raw token
HisKA:263:0.00000000000000783:330:68:643 HATPase_c#3
377-490 aa · 114 aa · 22.8% of protein
Raw token
HATPase_c:377:4.5e-33:490:114:109- Raw architecture: HAMP:178:3.28e-16:252:75:69#HisKA:263:0.00000000000000783:330:68:64#HATPase_c:377:4.5e-33:490:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009718405::NZ_WNAK01000004.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span107938-110110Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_03495RefSeq proteinWP_155175374.1
Context group ID
GCF_009718405::NZ_WNAK01000004.1::G00043Context members
GMD29_RS03500GMD29_RS03505
Partner locus tags
GMD29_RS03500GMD29_RS03505
Partner old locus tags
GMD29_03490GMD29_03495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155175374.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KJ71Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KJ71_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS03505Primary locus identifier stored in the genes table.
Old locus tagGMD29_03495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000004.1Sequence record reported by the local genomic context database.
Genomic interval108 605-110 110 nt1 506 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span107 938-110 110 ntGCF_009718405::NZ_WNAK01000004.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000004.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000004.1All displayed genes belong to this local TCS context.
Neighborhood span107 938-110 110 nt2 173 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
107 938 nt110 110 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GMD29_RS03500GCF_009718405#GMD29_RS03500
RROmpR
107 938-108 627 nt · Reverse (-)
GMD29_RS03505GCF_009718405#GMD29_RS03505
HKClassicCurrent focus
108 605-110 110 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS03505The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1470503
Simplified PFAM architecture for HKOC_1470503
PFAM domain coverage: 230 / 501 aa (45.9%)
1 aa501 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-252] | HisKA[264-329] | HATPase_c[378-488]
- Domain count: 3
- Matched identifier: HKOC_1470503
- Positioned domains: HAMP 200-252 ; HisKA 264-329 ; HATPase_c 378-488
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS03505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key