1 HisKA#1
85-146 aa · 62 aa · 20.5% of protein
Raw token
HisKA:85:0.000000000047:146:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS03385
Histidine kinase, Classic
Roseburia faecis · GCF_009718405
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009718405#GMD29_RS03385Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 302 aa (56.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
191-297 aa · 107 aa · 35.4% of protein
Raw token
HATPase_c:191:1.48e-28:297:107:109- Raw architecture: HisKA:85:0.000000000047:146:62:64#HATPase_c:191:1.48e-28:297:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009718405::NZ_WNAK01000004.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83139-84727Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_03375RefSeq proteinWP_155175354.1
Context group ID
GCF_009718405::NZ_WNAK01000004.1::G00042Context members
GMD29_RS03385GMD29_RS03390
Partner locus tags
GMD29_RS03385GMD29_RS03390
Partner old locus tags
GMD29_03375GMD29_03380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155175354.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KJ21Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KJ21_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS03385Primary locus identifier stored in the genes table.
Old locus tagGMD29_03375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000004.1Sequence record reported by the local genomic context database.
Genomic interval83 139-84 047 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 139-84 727 ntGCF_009718405::NZ_WNAK01000004.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000004.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000004.1All displayed genes belong to this local TCS context.
Neighborhood span83 139-84 727 nt1 589 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 139 nt84 727 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GMD29_RS03385GCF_009718405#GMD29_RS03385
HKClassicCurrent focus
83 139-84 047 nt · Reverse (-)
GMD29_RS03390GCF_009718405#GMD29_RS03390
RROmpR
84 044-84 727 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS03385The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2885039
Simplified PFAM architecture for HKOC_2885039
PFAM domain coverage: 170 / 302 aa (56.3%)
1 aa302 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-146] | HATPase_c[191-298]
- Domain count: 2
- Matched identifier: HKOC_2885039
- Positioned domains: HisKA 85-146 ; HATPase_c 191-298
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS03385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key