1 Response_reg#1
5-114 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:5:5.49e-31:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS02905
Response regulator OmpR family
Roseburia faecis · GCF_009718405
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009718405#GMD29_RS02905Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 221 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-219 aa · 76 aa · 34.4% of protein
Raw token
Trans_reg_C:144:9.03e-25:219:78:77- Raw architecture: Response_reg:5:5.49e-31:114:111:111#Trans_reg_C:144:9.03e-25:219:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009718405::NZ_WNAK01000003.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span156797-159078Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_02900RefSeq proteinWP_155175638.1
Context group ID
GCF_009718405::NZ_WNAK01000003.1::G00035Context members
GMD29_RS02895GMD29_RS02905
Partner locus tags
GMD29_RS02895GMD29_RS02905
Partner old locus tags
GMD29_02890GMD29_02900
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155175638.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KK46Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KK46_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS02905Primary locus identifier stored in the genes table.
Old locus tagGMD29_02900Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000003.1Sequence record reported by the local genomic context database.
Genomic interval158 413-159 078 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span156 797-159 078 ntGCF_009718405::NZ_WNAK01000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000003.1All displayed genes belong to this local TCS context.
Neighborhood span156 797-159 078 nt2 282 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
156 797 nt159 078 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GMD29_RS02895GCF_009718405#GMD29_RS02895
HKClassic
156 797-158 062 nt · Reverse (-)
GMD29_RS02905GCF_009718405#GMD29_RS02905
RROmpRCurrent focus
158 413-159 078 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS02905The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1691319
Simplified PFAM architecture for RROC_1691319
PFAM domain coverage: 186 / 221 aa (84.2%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1691319
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS02905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key