1 Response_reg#1
6-115 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:6:3.62e-37:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD29_RS02470
Response regulator OmpR family
Roseburia faecis · GCF_009718405
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009718405#GMD29_RS02470Stable P2CS identifier used across views.
GenomeGCF_009718405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 231 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-227 aa · 75 aa · 32.5% of protein
Raw token
Trans_reg_C:153:1.69e-33:227:77:77- Raw architecture: Response_reg:6:3.62e-37:115:111:111#Trans_reg_C:153:1.69e-33:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009718405::NZ_WNAK01000003.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span67719-69853Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD29_02465RefSeq proteinWP_155176867.1
Context group ID
GCF_009718405::NZ_WNAK01000003.1::G00033Context members
GMD29_RS02470GMD29_RS02475
Partner locus tags
GMD29_RS02470GMD29_RS02475
Partner old locus tags
GMD29_02465GMD29_02470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155176867.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KND1Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KND1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD29_RS02470Primary locus identifier stored in the genes table.
Old locus tagGMD29_02465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAK01000003.1Sequence record reported by the local genomic context database.
Genomic interval67 719-68 414 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 719-69 853 ntGCF_009718405::NZ_WNAK01000003.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718405::NZ_WNAK01000003.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAK01000003.1All displayed genes belong to this local TCS context.
Neighborhood span67 719-69 853 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 719 nt69 853 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GMD29_RS02470GCF_009718405#GMD29_RS02470
RROmpRCurrent focus
67 719-68 414 nt · Forward (+)
GMD29_RS02475GCF_009718405#GMD29_RS02475
HKClassic
68 411-69 853 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS02470The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1171764
Simplified PFAM architecture for RROC_1171764
PFAM domain coverage: 182 / 231 aa (78.8%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[156-227]
- Domain count: 2
- Matched identifier: RROC_1171764
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 156-227 ; Trans_reg_C 156-227
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS02470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_009718405
AssemblyASM971840v1 · Scaffoldhaploid
Genome composition3 583 549 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 107 · HK 46 · RR 59CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key