1 HisKA#1
488-550 aa · 63 aa · 8.8% of protein
Raw token
HisKA:488:4.23e-16:550:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GMD01_RS03065
Histidine kinase, Classic
[Ruminococcus] torques · GCF_009718245
ClassHKTypeClassicLength718 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009718245#GMD01_RS03065Stable P2CS identifier used across views.
GenomeGCF_009718245Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length718 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 718 aa (22.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa718 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
600-694 aa · 95 aa · 13.2% of protein
Raw token
HATPase_c:600:0.00000000000748:694:99:109- Raw architecture: HisKA:488:4.23e-16:550:63:64#HATPase_c:600:0.00000000000748:694:99:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009718245::NZ_WNAB01000005.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23851-26677Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGMD01_03080RefSeq proteinWP_155234518.1
Context group ID
GCF_009718245::NZ_WNAB01000005.1::G00022Context members
GMD01_RS03065GMD01_RS03070
Partner locus tags
GMD01_RS03065GMD01_RS03070
Partner old locus tags
GMD01_03080GMD01_03085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_155234518.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGMD01_RS03065Primary locus identifier stored in the genes table.
Old locus tagGMD01_03080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WNAB01000005.1Sequence record reported by the local genomic context database.
Genomic interval23 851-26 007 nt2 157 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 851-26 677 ntGCF_009718245::NZ_WNAB01000005.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009718245::NZ_WNAB01000005.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WNAB01000005.1All displayed genes belong to this local TCS context.
Neighborhood span23 851-26 677 nt2 827 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 851 nt26 677 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GMD01_RS03065GCF_009718245#GMD01_RS03065
HKClassicCurrent focus
23 851-26 007 nt · Reverse (-)
GMD01_RS03070GCF_009718245#GMD01_RS03070
RROmpR
25 979-26 677 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718245#GMD01_RS03065The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0736942
Simplified PFAM architecture for HKOC_0736942
PFAM domain coverage: 158 / 718 aa (22.0%)
1 aa718 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[488-550] | HATPase_c[600-694]
- Domain count: 2
- Matched identifier: HKOC_0736942
- Positioned domains: HisKA 488-550 ; HATPase_c 600-694
Cluster members and taxonomy
Representative gene: GCF_009718245#GMD01_RS03065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_009718245
AssemblyASM971824v1 · Contighaploid
Genome composition2 885 122 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 49 · HK 23 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key