1 Response_reg#1
9-146 aa · 138 aa · 46.6% of protein
Raw token
Response_reg:9:2.44e-25:146:138:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ31_RS04650
Response regulator NarL family
Bifidobacterium sp. WCA-178-WT-4B · GCF_009696495
ClassRRTypeNarLLength296 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009696495#FYJ31_RS04650Stable P2CS identifier used across views.
GenomeGCF_009696495Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length296 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 296 aa (66.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa296 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
233-290 aa · 58 aa · 19.6% of protein
Raw token
HTH_LUXR:233:1.49e-24:290:58:58- Raw architecture: Response_reg:9:2.44e-25:146:138:111#HTH_LUXR:233:1.49e-24:290:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009696495::NZ_VULV01000004.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114927-118294Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ31_04720RefSeq proteinWP_136500154.1
Context group ID
GCF_009696495::NZ_VULV01000004.1::G00011Context members
FYJ31_RS04650FYJ31_RS04655
Partner locus tags
FYJ31_RS04650FYJ31_RS04655
Partner old locus tags
FYJ31_04720FYJ31_04725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_136500154.1Primary protein accession used for annex mappings.
UniProt accessionA0A4S5BD51Primary UniProt accession resolved in the annex database.
UniProt IDA0A4S5BD51_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ31_RS04650Primary locus identifier stored in the genes table.
Old locus tagFYJ31_04720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VULV01000004.1Sequence record reported by the local genomic context database.
Genomic interval114 927-115 817 nt891 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span114 927-118 294 ntGCF_009696495::NZ_VULV01000004.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696495::NZ_VULV01000004.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VULV01000004.1All displayed genes belong to this local TCS context.
Neighborhood span114 927-118 294 nt3 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 927 nt118 294 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FYJ31_RS04650GCF_009696495#FYJ31_RS04650
RRNarLCurrent focus
114 927-115 817 nt · Reverse (-)
FYJ31_RS04655GCF_009696495#FYJ31_RS04655
HKClassic
115 901-118 294 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004803425#E6L38_RS01860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0580624
Simplified PFAM architecture for RROC_0580624
PFAM domain coverage: 126 / 296 aa (42.6%)
1 aa296 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-78] | GerE[235-290]
- Domain count: 2
- Matched identifier: RROC_0580624
- Positioned domains: Response_reg 9-78 ; Response_reg 9-78 ; GerE 235-290 ; GerE 235-290
Cluster members and taxonomy
Representative gene: GCF_004803425#E6L38_RS01860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 605 776 · GCF_009696495
AssemblyASM969649v1 · Contighaploid
Genome composition2 696 243 bp · 59,5% GCBifidobacterium sp. WCA-178-WT-4B
Signal transduction countsGenes 36 · HK 12 · RR 20CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key