1 Response_reg#1
9-146 aa · 138 aa · 46.6% of protein
Raw token
Response_reg:9:2.44e-25:146:138:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6L38_RS01860
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_004803425
ClassRRTypeNarLLength296 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004803425#E6L38_RS01860Stable P2CS identifier used across views.
GenomeGCF_004803425Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length296 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 296 aa (66.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa296 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
233-290 aa · 58 aa · 19.6% of protein
Raw token
HTH_LUXR:233:1.49e-24:290:58:58- Raw architecture: Response_reg:9:2.44e-25:146:138:111#HTH_LUXR:233:1.49e-24:290:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004803425::NZ_SSWL01000003.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17575-20942Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6L38_01865RefSeq proteinWP_136500154.1
Context group ID
GCF_004803425::NZ_SSWL01000003.1::G00009Context members
E6L38_RS01860E6L38_RS01865
Partner locus tags
E6L38_RS01860E6L38_RS01865
Partner old locus tags
E6L38_01865E6L38_01870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_136500154.1Primary protein accession used for annex mappings.
UniProt accessionA0A4S5BD51Primary UniProt accession resolved in the annex database.
UniProt IDA0A4S5BD51_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6L38_RS01860Primary locus identifier stored in the genes table.
Old locus tagE6L38_01865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SSWL01000003.1Sequence record reported by the local genomic context database.
Genomic interval17 575-18 465 nt891 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 575-20 942 ntGCF_004803425::NZ_SSWL01000003.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004803425::NZ_SSWL01000003.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SSWL01000003.1All displayed genes belong to this local TCS context.
Neighborhood span17 575-20 942 nt3 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 575 nt20 942 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6L38_RS01860GCF_004803425#E6L38_RS01860
RRNarLCurrent focus
17 575-18 465 nt · Reverse (-)
E6L38_RS01865GCF_004803425#E6L38_RS01865
HKClassic
18 549-20 942 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004803425#E6L38_RS01860The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0580624
Simplified PFAM architecture for RROC_0580624
PFAM domain coverage: 126 / 296 aa (42.6%)
1 aa296 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-78] | GerE[235-290]
- Domain count: 2
- Matched identifier: RROC_0580624
- Positioned domains: Response_reg 9-78 ; Response_reg 9-78 ; GerE 235-290 ; GerE 235-290
Cluster members and taxonomy
Representative gene: GCF_004803425#E6L38_RS01860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_004803425
AssemblyASM480342v1 · Contighaploid
Genome composition2 731 642 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 43 · HK 14 · RR 24CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key