1 Response_reg#1
7-120 aa · 114 aa · 49.6% of protein
Raw token
Response_reg:7:9.32e-19:120:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FYJ45_RS12415
Response regulator NarL family
Eisenbergiella porci · GCF_009696275
ClassRRTypeNarLLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009696275#FYJ45_RS12415Stable P2CS identifier used across views.
GenomeGCF_009696275Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 230 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-212 aa · 55 aa · 23.9% of protein
Raw token
HTH_LUXR:158:0.000000134:212:55:58- Raw architecture: Response_reg:7:9.32e-19:120:114:111#HTH_LUXR:158:0.000000134:212:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009696275::NZ_VUMI01000018.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3946-4638Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFYJ45_12390RefSeq proteinWP_154464840.1
Context group ID
GCF_009696275::NZ_VUMI01000018.1::G00024Context members
FYJ45_RS12415
Partner locus tags
FYJ45_RS12415
Partner old locus tags
FYJ45_12390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154464840.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WI24Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WI24_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFYJ45_RS12415Primary locus identifier stored in the genes table.
Old locus tagFYJ45_12390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VUMI01000018.1Sequence record reported by the local genomic context database.
Genomic interval3 946-4 638 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 946-4 638 ntGCF_009696275::NZ_VUMI01000018.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009696275::NZ_VUMI01000018.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VUMI01000018.1All displayed genes belong to this local TCS context.
Neighborhood span3 946-4 638 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 946 nt4 638 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FYJ45_RS12415GCF_009696275#FYJ45_RS12415
RRNarLCurrent focus
3 946-4 638 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS12415The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1215471
Simplified PFAM architecture for RROC_1215471
PFAM domain coverage: 112 / 230 aa (48.7%)
1 aa230 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[7-118]
- Domain count: 1
- Matched identifier: RROC_1215471
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS12415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_009696275
AssemblyASM969627v1 · Contigreference genome · haploid
Genome composition6 105 837 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 176 · HK 86 · RR 83CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key