1 HisKA#1
357-423 aa · 67 aa · 9.1% of protein
Raw token
HisKA:357:0.0000000000000264:423:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD85_RS12760
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_009679915
ClassHKTypeHybridLength734 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009679915#GKD85_RS12760Stable P2CS identifier used across views.
GenomeGCF_009679915Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length734 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage297 / 734 aa (40.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa734 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
470-587 aa · 118 aa · 16.1% of protein
Raw token
HATPase_c:470:2.22e-27:587:119:1093 Response_reg#3
611-722 aa · 112 aa · 15.3% of protein
Raw token
Response_reg:611:2.52e-27:722:112:111- Raw architecture: HisKA:357:0.0000000000000264:423:67:64#HATPase_c:470:2.22e-27:587:119:109#Response_reg:611:2.52e-27:722:112:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009679915::NZ_WKQE01000022.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span41253-43457Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD85_12770RefSeq proteinWP_154252636.1
Context group ID
GCF_009679915::NZ_WKQE01000022.1::G00014Context members
GKD85_RS12760
Partner locus tags
GKD85_RS12760
Partner old locus tags
GKD85_12770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154252636.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KB63Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KB63_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD85_RS12760Primary locus identifier stored in the genes table.
Old locus tagGKD85_12770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQE01000022.1Sequence record reported by the local genomic context database.
Genomic interval41 253-43 457 nt2 205 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 253-43 457 ntGCF_009679915::NZ_WKQE01000022.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679915::NZ_WKQE01000022.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQE01000022.1All displayed genes belong to this local TCS context.
Neighborhood span41 253-43 457 nt2 205 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 253 nt43 457 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GKD85_RS12760GCF_009679915#GKD85_RS12760
HKHybridCurrent focus
41 253-43 457 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS04250Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0704720
Simplified PFAM architecture for HKOC_0704720
PFAM domain coverage: 297 / 734 aa (40.5%)
1 aa734 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[357-423] | HATPase_c[471-586] | Response_reg[611-724]
- Domain count: 3
- Matched identifier: HKOC_0704720
- Positioned domains: HisKA 357-423 ; HATPase_c 471-586 ; Response_reg 611-724
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS04250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679915
AssemblyASM967991v1 · Scaffoldhaploid
Genome composition3 286 508 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 29 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key