1 Response_reg#1
3-105 aa · 103 aa · 42.9% of protein
Raw token
Response_reg:3:0.000000000000104:105:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD85_RS00550
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_009679915
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009679915#GKD85_RS00550Stable P2CS identifier used across views.
GenomeGCF_009679915Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 240 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-230 aa · 90 aa · 37.5% of protein
Raw token
LytTR:141:7.36e-18:230:95:98- Raw architecture: Response_reg:3:0.000000000000104:105:106:111#LytTR:141:7.36e-18:230:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009679915::NZ_WKQE01000001.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span107921-108643Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD85_00550RefSeq proteinWP_154251448.1
Context group ID
GCF_009679915::NZ_WKQE01000001.1::G00011Context members
GKD85_RS00550
Partner locus tags
GKD85_RS00550
Partner old locus tags
GKD85_00550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154251448.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KD59Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KD59_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD85_RS00550Primary locus identifier stored in the genes table.
Old locus tagGKD85_00550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQE01000001.1Sequence record reported by the local genomic context database.
Genomic interval107 921-108 643 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span107 921-108 643 ntGCF_009679915::NZ_WKQE01000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679915::NZ_WKQE01000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQE01000001.1All displayed genes belong to this local TCS context.
Neighborhood span107 921-108 643 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
107 921 nt108 643 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GKD85_RS00550GCF_009679915#GKD85_RS00550
RRLytTRCurrent focus
107 921-108 643 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS00650Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0890425
Simplified PFAM architecture for RROC_0890425
PFAM domain coverage: 194 / 240 aa (80.8%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-106] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_0890425
- Positioned domains: Response_reg 3-106 ; Response_reg 3-106 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS00650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679915
AssemblyASM967991v1 · Scaffoldhaploid
Genome composition3 286 508 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 29 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key