1 PAS_3#1
38-126 aa · 89 aa · 12.7% of protein
Raw token
PAS_3:38:0.0000000000289:126:95:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD85_RS09535
Response regulator, RpfG family
Faecalibacterium prausnitzii · GCF_009679915
ClassRRTypeRpfGLength701 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009679915#GKD85_RS09535Stable P2CS identifier used across views.
GenomeGCF_009679915Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
PAS_3GGDEFResponse_regHD
Protein length701 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage438 / 701 aa (62.5%)Merged over positioned domains only.
Domain description1 PAS_3,1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa701 aa
Domain-by-domain annotation4 items
2 GGDEF#2
190-334 aa · 145 aa · 20.7% of protein
Raw token
GGDEF:190:6.02e-38:334:157:1603 Response_reg#3
359-463 aa · 105 aa · 15.0% of protein
Raw token
Response_reg:359:9.03e-27:463:106:1114 HD#4
554-652 aa · 99 aa · 14.1% of protein
Raw token
HD:554:0.00000000000197:652:99:110- Raw architecture: PAS_3:38:0.0000000000289:126:95:89#GGDEF:190:6.02e-38:334:157:160#Response_reg:359:9.03e-27:463:106:111#HD:554:0.00000000000197:652:99:110
- Domain description: 1 PAS_3,1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009679915::NZ_WKQE01000013.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span45514-47619Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD85_09540RefSeq proteinWP_154252472.1
Context group ID
GCF_009679915::NZ_WKQE01000013.1::G00003Context members
GKD85_RS09535
Partner locus tags
GKD85_RS09535
Partner old locus tags
GKD85_09540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154252472.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KQX8Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KQX8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD85_RS09535Primary locus identifier stored in the genes table.
Old locus tagGKD85_09540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQE01000013.1Sequence record reported by the local genomic context database.
Genomic interval45 514-47 619 nt2 106 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 514-47 619 ntGCF_009679915::NZ_WKQE01000013.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679915::NZ_WKQE01000013.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQE01000013.1All displayed genes belong to this local TCS context.
Neighborhood span45 514-47 619 nt2 106 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 514 nt47 619 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GKD85_RS09535GCF_009679915#GKD85_RS09535
RRRpfGCurrent focus
45 514-47 619 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS10365Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + GGDEF + Response_reg + HD_54 domains in the representative PFAM annotation.
PFAM architecture for RROC_0029732
Simplified PFAM architecture for RROC_0029732
PFAM domain coverage: 475 / 701 aa (67.8%)
1 aa701 aa
PAS_3GGDEFResponse_regHD_5
- Simplified architecture: PAS_3 + GGDEF + Response_reg + HD_5
- Raw architecture: PAS_3[39-119] | GGDEF[190-334] | Response_reg[359-465] | HD_5[531-672]
- Domain count: 4
- Matched identifier: RROC_0029732
- Positioned domains: PAS_3 39-119 ; PAS_3 39-119 ; GGDEF 190-334 ; GGDEF 190-334 ; Response_reg 359-465 ; Response_reg 359-465 ; HD_5 531-672 ; HD_5 531-672
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS10365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679915
AssemblyASM967991v1 · Scaffoldhaploid
Genome composition3 286 508 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 29 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key