1 HisKA#1
121-175 aa · 55 aa · 16.3% of protein
Raw token
HisKA:121:0.0000047:175:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD85_RS05375
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_009679915
ClassHKTypeClassicLength338 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679915#GKD85_RS05375Stable P2CS identifier used across views.
GenomeGCF_009679915Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length338 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 338 aa (46.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa338 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
228-328 aa · 101 aa · 29.9% of protein
Raw token
HATPase_c:228:1.21e-23:328:101:109- Raw architecture: HisKA:121:0.0000047:175:61:64#HATPase_c:228:1.21e-23:328:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679915::NZ_WKQE01000005.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22444-24119Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD85_05375RefSeq proteinWP_154251890.1
Context group ID
GCF_009679915::NZ_WKQE01000005.1::G00034Context members
GKD85_RS05370GKD85_RS05375
Partner locus tags
GKD85_RS05370GKD85_RS05375
Partner old locus tags
GKD85_05370GKD85_05375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154251890.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KF32Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KF32_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD85_RS05375Primary locus identifier stored in the genes table.
Old locus tagGKD85_05375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQE01000005.1Sequence record reported by the local genomic context database.
Genomic interval23 103-24 119 nt1 017 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 444-24 119 ntGCF_009679915::NZ_WKQE01000005.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679915::NZ_WKQE01000005.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQE01000005.1All displayed genes belong to this local TCS context.
Neighborhood span22 444-24 119 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 444 nt24 119 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD85_RS05370GCF_009679915#GKD85_RS05370
RROmpR
22 444-23 106 nt · Forward (+)
GKD85_RS05375GCF_009679915#GKD85_RS05375
HKClassicCurrent focus
23 103-24 119 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS06755Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2842758
Simplified PFAM architecture for HKOC_2842758
PFAM domain coverage: 110 / 338 aa (32.5%)
1 aa338 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-330]
- Domain count: 1
- Matched identifier: HKOC_2842758
- Positioned domains: HATPase_c 221-330
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS06755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679915
AssemblyASM967991v1 · Scaffoldhaploid
Genome composition3 286 508 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 29 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key