1 Response_reg#1
4-118 aa · 115 aa · 27.4% of protein
Raw token
Response_reg:4:6.65e-30:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD85_RS04690
Response regulator, unclassified
Faecalibacterium prausnitzii · GCF_009679915
ClassRRTypeunclassifiedLength420 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679915#GKD85_RS04690Stable P2CS identifier used across views.
GenomeGCF_009679915Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length420 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage196 / 420 aa (46.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa420 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
327-368 aa · 42 aa · 10.0% of protein
Raw token
HTH_AraC:327:0.0000000292:368:42:423 HTH_AraC#3
380-418 aa · 39 aa · 9.3% of protein
Raw token
HTH_AraC:380:0.00000000053:418:39:42- Raw architecture: Response_reg:4:6.65e-30:118:115:111#HTH_AraC:327:0.0000000292:368:42:42#HTH_AraC:380:0.00000000053:418:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679915::NZ_WKQE01000004.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8572-11626Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD85_04690RefSeq proteinWP_154251815.1
Context group ID
GCF_009679915::NZ_WKQE01000004.1::G00030Context members
GKD85_RS04690GKD85_RS04695
Partner locus tags
GKD85_RS04690GKD85_RS04695
Partner old locus tags
GKD85_04690GKD85_04695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154251815.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KD99Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KD99_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD85_RS04690Primary locus identifier stored in the genes table.
Old locus tagGKD85_04690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQE01000004.1Sequence record reported by the local genomic context database.
Genomic interval8 572-9 834 nt1 263 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 572-11 626 ntGCF_009679915::NZ_WKQE01000004.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679915::NZ_WKQE01000004.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQE01000004.1All displayed genes belong to this local TCS context.
Neighborhood span8 572-11 626 nt3 055 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 572 nt11 626 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD85_RS04690GCF_009679915#GKD85_RS04690
RRunclassifiedCurrent focus
8 572-9 834 nt · Reverse (-)
GKD85_RS04695GCF_009679915#GKD85_RS04695
HKClassic
9 809-11 626 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS03245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0356054
Simplified PFAM architecture for RROC_0356054
PFAM domain coverage: 194 / 420 aa (46.2%)
1 aa420 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-116] | HTH_AraC[327-367] | HTH_AraC[379-418]
- Domain count: 3
- Matched identifier: RROC_0356054
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_AraC 327-367 ; HTH_AraC 327-367 ; HTH_AraC 379-418 ; HTH_AraC 379-418
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS03245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679915
AssemblyASM967991v1 · Scaffoldhaploid
Genome composition3 286 508 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 29 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key