1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.000000116:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD84_RS04620
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_009679905
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679905#GKD84_RS04620Stable P2CS identifier used across views.
GenomeGCF_009679905Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 343 aa (49.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:1.38e-27:341:101:109- Raw architecture: HisKA:123:0.000000116:189:67:64#HATPase_c:241:1.38e-27:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679905::NZ_WKQC01000004.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36370-38090Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD84_04620RefSeq proteinWP_118375181.1
Context group ID
GCF_009679905::NZ_WKQC01000004.1::G00031Context members
GKD84_RS04620GKD84_RS04625
Partner locus tags
GKD84_RS04620GKD84_RS04625
Partner old locus tags
GKD84_04620GKD84_04625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118375181.1Primary protein accession used for annex mappings.
UniProt accessionA0A396FFY8Primary UniProt accession resolved in the annex database.
UniProt IDA0A396FFY8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD84_RS04620Primary locus identifier stored in the genes table.
Old locus tagGKD84_04620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQC01000004.1Sequence record reported by the local genomic context database.
Genomic interval36 370-37 401 nt1 032 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 370-38 090 ntGCF_009679905::NZ_WKQC01000004.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679905::NZ_WKQC01000004.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQC01000004.1All displayed genes belong to this local TCS context.
Neighborhood span36 370-38 090 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 370 nt38 090 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD84_RS04620GCF_009679905#GKD84_RS04620
HKClassicCurrent focus
36 370-37 401 nt · Reverse (-)
GKD84_RS04625GCF_009679905#GKD84_RS04625
RROmpR
37 398-38 090 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474775#DW001_RS05585Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2828848
Simplified PFAM architecture for HKOC_2828848
PFAM domain coverage: 174 / 343 aa (50.7%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2828848
- Positioned domains: HisKA 124-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_003474775#DW001_RS05585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679905
AssemblyASM967990v1 · Contighaploid
Genome composition3 184 549 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 63 · HK 30 · RR 31CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key