1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.000000116:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW001_RS05585
Histidine kinase, Classic
Agathobacter rectalis · GCF_003474775
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474775#DW001_RS05585Stable P2CS identifier used across views.
GenomeGCF_003474775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 343 aa (49.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:1.38e-27:341:101:109- Raw architecture: HisKA:123:0.000000116:189:67:64#HATPase_c:241:1.38e-27:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474775::NZ_QRPB01000005.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span93848-95568Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW001_05585RefSeq proteinWP_118375181.1
Context group ID
GCF_003474775::NZ_QRPB01000005.1::G00048Context members
DW001_RS05580DW001_RS05585
Partner locus tags
DW001_RS05580DW001_RS05585
Partner old locus tags
DW001_05580DW001_05585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118375181.1Primary protein accession used for annex mappings.
UniProt accessionA0A396FFY8Primary UniProt accession resolved in the annex database.
UniProt IDA0A396FFY8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW001_RS05585Primary locus identifier stored in the genes table.
Old locus tagDW001_05585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPB01000005.1Sequence record reported by the local genomic context database.
Genomic interval94 537-95 568 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span93 848-95 568 ntGCF_003474775::NZ_QRPB01000005.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474775::NZ_QRPB01000005.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPB01000005.1All displayed genes belong to this local TCS context.
Neighborhood span93 848-95 568 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 848 nt95 568 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW001_RS05580GCF_003474775#DW001_RS05580
RROmpR
93 848-94 540 nt · Forward (+)
DW001_RS05585GCF_003474775#DW001_RS05585
HKClassicCurrent focus
94 537-95 568 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474775#DW001_RS05585The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2828848
Simplified PFAM architecture for HKOC_2828848
PFAM domain coverage: 174 / 343 aa (50.7%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2828848
- Positioned domains: HisKA 124-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_003474775#DW001_RS05585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_003474775
AssemblyASM347477v1 · Scaffoldhaploid
Genome composition3 550 335 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 96 · HK 38 · RR 55CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key