1 HAMP#1
196-264 aa · 69 aa · 13.6% of protein
Raw token
HAMP:196:0.0000000012:264:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD89_RS01365
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_009679855
ClassHKTypeClassicLength509 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679855#GKD89_RS01365Stable P2CS identifier used across views.
GenomeGCF_009679855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 509 aa (49.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation3 items
2 His_kinase#2
296-375 aa · 80 aa · 15.7% of protein
Raw token
His_kinase:296:5.42e-29:375:80:803 HATPase_c#3
396-500 aa · 105 aa · 20.6% of protein
Raw token
HATPase_c:396:0.00000000000000294:500:108:109- Raw architecture: HAMP:196:0.0000000012:264:69:69#His_kinase:296:5.42e-29:375:80:80#HATPase_c:396:0.00000000000000294:500:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679855::NZ_WKQA01000001.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span255485-257826Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD89_01370RefSeq proteinWP_154251772.1
Context group ID
GCF_009679855::NZ_WKQA01000001.1::G00018Context members
GKD89_RS01365GKD89_RS01370
Partner locus tags
GKD89_RS01365GKD89_RS01370
Partner old locus tags
GKD89_01370GKD89_01375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154251772.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KL60Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KL60_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD89_RS01365Primary locus identifier stored in the genes table.
Old locus tagGKD89_01370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQA01000001.1Sequence record reported by the local genomic context database.
Genomic interval255 485-257 014 nt1 530 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span255 485-257 826 ntGCF_009679855::NZ_WKQA01000001.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679855::NZ_WKQA01000001.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQA01000001.1All displayed genes belong to this local TCS context.
Neighborhood span255 485-257 826 nt2 342 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
255 485 nt257 826 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD89_RS01365GCF_009679855#GKD89_RS01365
HKClassicCurrent focus
255 485-257 014 nt · Forward (+)
GKD89_RS01370GCF_009679855#GKD89_RS01370
RRunclassified
257 011-257 826 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS02350Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1433880
Simplified PFAM architecture for HKOC_1433880
PFAM domain coverage: 234 / 509 aa (46.0%)
1 aa509 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[212-261] | His_kinase[297-375] | HATPase_c[396-500]
- Domain count: 3
- Matched identifier: HKOC_1433880
- Positioned domains: HAMP 212-261 ; His_kinase 297-375 ; HATPase_c 396-500
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS02350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679855
AssemblyASM967985v1 · Scaffoldhaploid
Genome composition3 277 652 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 30 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key