1 HAMP#1
89-156 aa · 68 aa · 17.8% of protein
Raw token
HAMP:89:0.0000000000442:156:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD89_RS00880
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_009679855
ClassHKTypeClassicLength382 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679855#GKD89_RS00880Stable P2CS identifier used across views.
GenomeGCF_009679855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length382 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 382 aa (63.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa382 aa
Domain-by-domain annotation3 items
2 HisKA#2
161-226 aa · 66 aa · 17.3% of protein
Raw token
HisKA:161:0.000000000015:226:66:643 HATPase_c#3
273-380 aa · 108 aa · 28.3% of protein
Raw token
HATPase_c:273:5.06e-33:380:108:109- Raw architecture: HAMP:89:0.0000000000442:156:68:69#HisKA:161:0.000000000015:226:66:64#HATPase_c:273:5.06e-33:380:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679855::NZ_WKQA01000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span153441-155263Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD89_00885RefSeq proteinWP_154252069.1
Context group ID
GCF_009679855::NZ_WKQA01000001.1::G00016Context members
GKD89_RS00875GKD89_RS00880
Partner locus tags
GKD89_RS00875GKD89_RS00880
Partner old locus tags
GKD89_00880GKD89_00885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154252069.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KET6Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KET6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD89_RS00880Primary locus identifier stored in the genes table.
Old locus tagGKD89_00885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKQA01000001.1Sequence record reported by the local genomic context database.
Genomic interval154 115-155 263 nt1 149 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span153 441-155 263 ntGCF_009679855::NZ_WKQA01000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679855::NZ_WKQA01000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKQA01000001.1All displayed genes belong to this local TCS context.
Neighborhood span153 441-155 263 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
153 441 nt155 263 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD89_RS00875GCF_009679855#GKD89_RS00875
RROmpR
153 441-154 118 nt · Forward (+)
GKD89_RS00880GCF_009679855#GKD89_RS00880
HKClassicCurrent focus
154 115-155 263 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS04905Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2593136
Simplified PFAM architecture for HKOC_2593136
PFAM domain coverage: 227 / 382 aa (59.4%)
1 aa382 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[103-155] | HisKA[161-226] | HATPase_c[272-379]
- Domain count: 3
- Matched identifier: HKOC_2593136
- Positioned domains: HAMP 103-155 ; HisKA 161-226 ; HATPase_c 272-379
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS04905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679855
AssemblyASM967985v1 · Scaffoldhaploid
Genome composition3 277 652 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 30 · RR 32CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key