1 HAMP#1
159-225 aa · 67 aa · 14.7% of protein
Raw token
HAMP:159:0.00000421:225:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD73_RS03800
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_009679795
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679795#GKD73_RS03800Stable P2CS identifier used across views.
GenomeGCF_009679795Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 455 aa (51.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-302 aa · 67 aa · 14.7% of protein
Raw token
HisKA:236:0.00000000000728:302:67:643 HATPase_c#3
351-452 aa · 102 aa · 22.4% of protein
Raw token
HATPase_c:351:7.11e-18:452:106:109- Raw architecture: HAMP:159:0.00000421:225:69:69#HisKA:236:0.00000000000728:302:67:64#HATPase_c:351:7.11e-18:452:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679795::NZ_WKPZ01000003.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139119-141202Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD73_03800RefSeq proteinWP_154251869.1
Context group ID
GCF_009679795::NZ_WKPZ01000003.1::G00025Context members
GKD73_RS03795GKD73_RS03800
Partner locus tags
GKD73_RS03795GKD73_RS03800
Partner old locus tags
GKD73_03795GKD73_03800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154251869.1Primary protein accession used for annex mappings.
UniProt accessionA0A6A8KN66Primary UniProt accession resolved in the annex database.
UniProt IDA0A6A8KN66_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD73_RS03800Primary locus identifier stored in the genes table.
Old locus tagGKD73_03800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKPZ01000003.1Sequence record reported by the local genomic context database.
Genomic interval139 835-141 202 nt1 368 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span139 119-141 202 ntGCF_009679795::NZ_WKPZ01000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679795::NZ_WKPZ01000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKPZ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span139 119-141 202 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 119 nt141 202 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD73_RS03795GCF_009679795#GKD73_RS03795
RROmpR
139 119-139 838 nt · Forward (+)
GKD73_RS03800GCF_009679795#GKD73_RS03800
HKClassicCurrent focus
139 835-141 202 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009679795#GKD73_RS03800The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1903543
Simplified PFAM architecture for HKOC_1903543
PFAM domain coverage: 169 / 455 aa (37.1%)
1 aa455 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-302] | HATPase_c[351-452]
- Domain count: 2
- Matched identifier: HKOC_1903543
- Positioned domains: HisKA 236-302 ; HATPase_c 351-452
Cluster members and taxonomy
Representative gene: GCF_009679795#GKD73_RS03800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679795
AssemblyASM967979v1 · Scaffoldhaploid
Genome composition3 308 444 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 64 · HK 29 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key