1 Response_reg#1
2-114 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:2:3.74e-31:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GKD72_RS04925
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_009679775
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009679775#GKD72_RS04925Stable P2CS identifier used across views.
GenomeGCF_009679775Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-220 aa · 73 aa · 32.0% of protein
Raw token
Trans_reg_C:148:5.79e-28:220:76:77- Raw architecture: Response_reg:2:3.74e-31:114:113:111#Trans_reg_C:148:5.79e-28:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009679775::NZ_WKPW01000005.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59899-61931Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGKD72_04920RefSeq proteinWP_005925707.1
Context group ID
GCF_009679775::NZ_WKPW01000005.1::G00029Context members
GKD72_RS04920GKD72_RS04925
Partner locus tags
GKD72_RS04920GKD72_RS04925
Partner old locus tags
GKD72_04915GKD72_04920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005925707.1Primary protein accession used for annex mappings.
UniProt accessionA8SF27Primary UniProt accession resolved in the annex database.
UniProt IDA8SF27_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGKD72_RS04925Primary locus identifier stored in the genes table.
Old locus tagGKD72_04920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WKPW01000005.1Sequence record reported by the local genomic context database.
Genomic interval61 245-61 931 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 899-61 931 ntGCF_009679775::NZ_WKPW01000005.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009679775::NZ_WKPW01000005.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WKPW01000005.1All displayed genes belong to this local TCS context.
Neighborhood span59 899-61 931 nt2 033 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 899 nt61 931 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GKD72_RS04920GCF_009679775#GKD72_RS04920
HKClassic
59 899-61 248 nt · Reverse (-)
GKD72_RS04925GCF_009679775#GKD72_RS04925
RROmpRCurrent focus
61 245-61 931 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154385#FAEPRAM212_RS10795Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1302089
Simplified PFAM architecture for RROC_1302089
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1302089
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_000154385#FAEPRAM212_RS10795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_009679775
AssemblyASM967977v1 · Scaffoldhaploid
Genome composition3 085 873 bp · 56,5% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 56 · HK 26 · RR 28CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key