1 Response_reg#1
17-128 aa · 112 aa · 50.0% of protein
Raw token
Response_reg:17:1.18e-29:128:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EKV65_RS08880
Response regulator NarL family
Bacillus anthracis · GCF_009669055
ClassRRTypeNarLLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009669055#EKV65_RS08880Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 224 aa (74.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
164-217 aa · 54 aa · 24.1% of protein
Raw token
HTH_LUXR:164:2.09e-18:217:54:58- Raw architecture: Response_reg:17:1.18e-29:128:113:111#HTH_LUXR:164:2.09e-18:217:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009669055::NZ_RXZK01000347.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-675Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEKV65_09020RefSeq proteinWP_229141567.1
Context group ID
GCF_009669055::NZ_RXZK01000347.1::G00011Context members
EKV65_RS08880
Partner locus tags
EKV65_RS08880
Partner old locus tags
EKV65_09020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_229141567.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEKV65_RS08880Primary locus identifier stored in the genes table.
Old locus tagEKV65_09020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RXZK01000347.1Sequence record reported by the local genomic context database.
Genomic interval1-675 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-675 ntGCF_009669055::NZ_RXZK01000347.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009669055::NZ_RXZK01000347.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RXZK01000347.1All displayed genes belong to this local TCS context.
Neighborhood span1-675 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt675 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EKV65_RS08880GCF_009669055#EKV65_RS08880
RRNarLCurrent focus
1-675 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009669055#EKV65_RS08880The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1548507
Simplified PFAM architecture for RROC_1548507
PFAM domain coverage: 167 / 224 aa (74.6%)
1 aa224 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[17-128] | GerE[163-217]
- Domain count: 2
- Matched identifier: RROC_1548507
- Positioned domains: Response_reg 17-128 ; Response_reg 17-128 ; GerE 163-217 ; GerE 163-217
Cluster members and taxonomy
Representative gene: GCF_009669055#EKV65_RS08880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 392 · GCF_009669055
AssemblyASM966905v1 · Scaffoldhaploid
Genome composition5 180 538 bp · 35,5% GCBacillus anthracis
Signal transduction countsGenes 83 · HK 41 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key