1 HisKA_3#1
188-253 aa · 66 aa · 17.1% of protein
Raw token
HisKA_3:188:5.14e-21:253:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FTB24_RS12670
Histidine kinase, Classic
Clostridioides difficile · GCF_009362915
ClassHKTypeClassicLength387 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009362915#FTB24_RS12670Stable P2CS identifier used across views.
GenomeGCF_009362915Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length387 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 387 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa387 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
294-378 aa · 85 aa · 22.0% of protein
Raw token
HATPase_c:294:0.00000000132:378:104:109- Raw architecture: HisKA_3:188:5.14e-21:253:67:68#HATPase_c:294:0.00000000132:378:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009362915::NZ_CP045224.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2765577-2767380Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFTB24_12665RefSeq proteinWP_003424698.1
Context group ID
GCF_009362915::NZ_CP045224.1::G00039Context members
FTB24_RS12670FTB24_RS12675
Partner locus tags
FTB24_RS12670FTB24_RS12675
Partner old locus tags
FTB24_12665FTB24_12670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003424698.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3GVW1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3GVW1_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFTB24_RS12670Primary locus identifier stored in the genes table.
Old locus tagFTB24_12665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP045224.1Sequence record reported by the local genomic context database.
Genomic interval2 765 577-2 766 740 nt1 164 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 765 577-2 767 380 ntGCF_009362915::NZ_CP045224.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009362915::NZ_CP045224.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP045224.1All displayed genes belong to this local TCS context.
Neighborhood span2 765 577-2 767 380 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 765 577 nt2 767 380 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FTB24_RS12670GCF_009362915#FTB24_RS12670
HKClassicCurrent focus
2 765 577-2 766 740 nt · Forward (+)
FTB24_RS12675GCF_009362915#FTB24_RS12675
RRNarL
2 766 733-2 767 380 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0206215Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550121
Simplified PFAM architecture for HKOC_2550121
PFAM domain coverage: 150 / 387 aa (38.8%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-252] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550121
- Positioned domains: HisKA_3 188-252 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0206215
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 307 total members. Page 1 / 7.
GCF_000155065#QAE_RS0206215 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_009362915
AssemblyASM936291v1 · Complete Genomehaploid
Genome composition4 142 594 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 97 · HK 48 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key