1 HisKA#1
184-249 aa · 66 aa · 14.5% of protein
Raw token
HisKA:184:0.00000000000153:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GBB04_RS09230
Histidine kinase, Classic
Bifidobacterium dentium · GCF_009160735
ClassHKTypeClassicLength456 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009160735#GBB04_RS09230Stable P2CS identifier used across views.
GenomeGCF_009160735Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length456 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 456 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa456 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-427 aa · 112 aa · 24.6% of protein
Raw token
HATPase_c:316:7.03e-31:427:112:109- Raw architecture: HisKA:184:0.00000000000153:249:66:64#HATPase_c:316:7.03e-31:427:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009160735::NZ_WDPD01000011.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45421-47495Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGBB04_09230RefSeq proteinWP_034518619.1
Context group ID
GCF_009160735::NZ_WDPD01000011.1::G00005Context members
GBB04_RS09230GBB04_RS09235
Partner locus tags
GBB04_RS09230GBB04_RS09235
Partner old locus tags
GBB04_09230GBB04_09235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_034518619.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N2R3H0Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N2R3H0_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGBB04_RS09230Primary locus identifier stored in the genes table.
Old locus tagGBB04_09230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WDPD01000011.1Sequence record reported by the local genomic context database.
Genomic interval45 421-46 791 nt1 371 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 421-47 495 ntGCF_009160735::NZ_WDPD01000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009160735::NZ_WDPD01000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WDPD01000011.1All displayed genes belong to this local TCS context.
Neighborhood span45 421-47 495 nt2 075 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 421 nt47 495 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GBB04_RS09230GCF_009160735#GBB04_RS09230
HKClassicCurrent focus
45 421-46 791 nt · Forward (+)
GBB04_RS09235GCF_009160735#GBB04_RS09235
RROmpR
46 791-47 495 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000513015#HMPREF1494_RS01075Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1888332
Simplified PFAM architecture for HKOC_1888332
PFAM domain coverage: 177 / 456 aa (38.8%)
1 aa456 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[317-427]
- Domain count: 2
- Matched identifier: HKOC_1888332
- Positioned domains: HisKA 184-249 ; HATPase_c 317-427
Cluster members and taxonomy
Representative gene: GCF_000513015#HMPREF1494_RS01075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 689 · GCF_009160735
AssemblyASM916073v1 · Scaffoldhaploid
Genome composition2 868 671 bp · 58,0% GCBifidobacterium dentium
Signal transduction countsGenes 37 · HK 15 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key