1 Response_reg#1
23-136 aa · 114 aa · 47.9% of protein
Raw token
Response_reg:23:9.17e-16:136:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GBA87_RS02140
Response regulator NarL family
Bifidobacterium bifidum · GCF_009159495
ClassRRTypeNarLLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009159495#GBA87_RS02140Stable P2CS identifier used across views.
GenomeGCF_009159495Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 238 aa (72.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
175-232 aa · 58 aa · 24.4% of protein
Raw token
HTH_LUXR:175:2.73e-26:232:58:58- Raw architecture: Response_reg:23:9.17e-16:136:114:111#HTH_LUXR:175:2.73e-26:232:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009159495::NZ_WDOY01000002.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span31572-32405Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGBA87_02140RefSeq proteinWP_371708986.1
Context group ID
GCF_009159495::NZ_WDOY01000002.1::G00008Context members
GBA87_RS02140
Partner locus tags
GBA87_RS02140
Partner old locus tags
GBA87_02140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_371708986.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGBA87_RS02140Primary locus identifier stored in the genes table.
Old locus tagGBA87_02140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WDOY01000002.1Sequence record reported by the local genomic context database.
Genomic interval31 572-32 405 nt834 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span31 572-32 405 ntGCF_009159495::NZ_WDOY01000002.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009159495::NZ_WDOY01000002.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WDOY01000002.1All displayed genes belong to this local TCS context.
Neighborhood span31 572-32 405 nt834 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 572 nt32 405 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GBA87_RS02140GCF_009159495#GBA87_RS02140
RRNarLCurrent focus
31 572-32 405 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000165905#BBPR_RS07590Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932652
Simplified PFAM architecture for RROC_0932652
PFAM domain coverage: 169 / 238 aa (71.0%)
1 aa238 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[23-135] | GerE[177-232]
- Domain count: 2
- Matched identifier: RROC_0932652
- Positioned domains: Response_reg 23-135 ; Response_reg 23-135 ; GerE 177-232 ; GerE 177-232
Cluster members and taxonomy
Representative gene: GCF_000165905#BBPR_RS07590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_009159495
AssemblyASM915949v1 · Scaffoldhaploid
Genome composition2 327 549 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key