1 Response_reg#1
4-72 aa · 69 aa · 40.6% of protein
Raw token
Response_reg:4:0.0000000466:72:69:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GBA87_RS00590
Response regulator NarL family
Bifidobacterium bifidum · GCF_009159495
ClassRRTypeNarLLength170 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009159495#GBA87_RS00590Stable P2CS identifier used across views.
GenomeGCF_009159495Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length170 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage124 / 170 aa (72.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa170 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
110-164 aa · 55 aa · 32.4% of protein
Raw token
HTH_LUXR:110:6.7e-16:164:55:58- Raw architecture: Response_reg:4:0.0000000466:72:69:111#HTH_LUXR:110:6.7e-16:164:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009159495::NZ_WDOY01000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span143534-144046Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGBA87_00590RefSeq proteinWP_151909752.1
Context group ID
GCF_009159495::NZ_WDOY01000001.1::G00006Context members
GBA87_RS00590
Partner locus tags
GBA87_RS00590
Partner old locus tags
GBA87_00590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_151909752.1Primary protein accession used for annex mappings.
UniProt accessionA0A7J5TQZ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A7J5TQZ6_BIFBIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGBA87_RS00590Primary locus identifier stored in the genes table.
Old locus tagGBA87_00590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WDOY01000001.1Sequence record reported by the local genomic context database.
Genomic interval143 534-144 046 nt513 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span143 534-144 046 ntGCF_009159495::NZ_WDOY01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009159495::NZ_WDOY01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WDOY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span143 534-144 046 nt513 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 534 nt144 046 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GBA87_RS00590GCF_009159495#GBA87_RS00590
RRNarLCurrent focus
143 534-144 046 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009078055#GBA75_RS00570Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2197981
Simplified PFAM architecture for RROC_2197981
PFAM domain coverage: 125 / 170 aa (73.5%)
1 aa170 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-74] | GerE[111-165]
- Domain count: 2
- Matched identifier: RROC_2197981
- Positioned domains: Response_reg 5-74 ; Response_reg 5-74 ; GerE 111-165 ; GerE 111-165
Cluster members and taxonomy
Representative gene: GCF_009078055#GBA75_RS00570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_009159495
AssemblyASM915949v1 · Scaffoldhaploid
Genome composition2 327 549 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key