1 HAMP#1
56-126 aa · 71 aa · 19.3% of protein
Raw token
HAMP:56:5.01e-18:126:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GBA87_RS00235
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_009159495
ClassHKTypeClassicLength368 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009159495#GBA87_RS00235Stable P2CS identifier used across views.
GenomeGCF_009159495Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length368 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 368 aa (67.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa368 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-194 aa · 65 aa · 17.7% of protein
Raw token
HisKA:130:0.000000000000067:194:65:643 HATPase_c#3
239-349 aa · 111 aa · 30.2% of protein
Raw token
HATPase_c:239:4.08e-23:349:112:109- Raw architecture: HAMP:56:5.01e-18:126:71:69#HisKA:130:0.000000000000067:194:65:64#HATPase_c:239:4.08e-23:349:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009159495::NZ_WDOY01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54099-55924Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGBA87_00235RefSeq proteinWP_029414621.1
Context group ID
GCF_009159495::NZ_WDOY01000001.1::G00004Context members
GBA87_RS00230GBA87_RS00235
Partner locus tags
GBA87_RS00230GBA87_RS00235
Partner old locus tags
GBA87_00230GBA87_00235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029414621.1Primary protein accession used for annex mappings.
UniProt accessionA0A1V8R199Primary UniProt accession resolved in the annex database.
UniProt IDA0A1V8R199_BIFBIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGBA87_RS00235Primary locus identifier stored in the genes table.
Old locus tagGBA87_00235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WDOY01000001.1Sequence record reported by the local genomic context database.
Genomic interval54 818-55 924 nt1 107 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 099-55 924 ntGCF_009159495::NZ_WDOY01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009159495::NZ_WDOY01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WDOY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span54 099-55 924 nt1 826 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 099 nt55 924 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GBA87_RS00230GCF_009159495#GBA87_RS00230
RROmpR
54 099-54 818 nt · Forward (+)
GBA87_RS00235GCF_009159495#GBA87_RS00235
HKClassicCurrent focus
54 818-55 924 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155395#BBNG_RS03225Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2698052
Simplified PFAM architecture for HKOC_2698052
PFAM domain coverage: 231 / 368 aa (62.8%)
1 aa368 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[72-125] | HisKA[130-194] | HATPase_c[239-350]
- Domain count: 3
- Matched identifier: HKOC_2698052
- Positioned domains: HAMP 72-125 ; HisKA 130-194 ; HATPase_c 239-350
Cluster members and taxonomy
Representative gene: GCF_000155395#BBNG_RS03225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_009159495
AssemblyASM915949v1 · Scaffoldhaploid
Genome composition2 327 549 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key