1 HisKA_3#1
194-257 aa · 64 aa · 15.0% of protein
Raw token
HisKA_3:194:3.35e-16:257:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GBA87_RS00035
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_009159495
ClassHKTypeClassicLength427 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009159495#GBA87_RS00035Stable P2CS identifier used across views.
GenomeGCF_009159495Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length427 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 427 aa (37.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa427 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
304-397 aa · 94 aa · 22.0% of protein
Raw token
HATPase_c:304:0.0000000225:397:101:109- Raw architecture: HisKA_3:194:3.35e-16:257:64:68#HATPase_c:304:0.0000000225:397:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009159495::NZ_WDOY01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6595-8567Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGBA87_00035RefSeq proteinWP_117686973.1
Context group ID
GCF_009159495::NZ_WDOY01000001.1::G00002Context members
GBA87_RS00035GBA87_RS00040
Partner locus tags
GBA87_RS00035GBA87_RS00040
Partner old locus tags
GBA87_00035GBA87_00040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117686973.1Primary protein accession used for annex mappings.
UniProt accessionA0A415C7K8Primary UniProt accession resolved in the annex database.
UniProt IDA0A415C7K8_BIFBIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGBA87_RS00035Primary locus identifier stored in the genes table.
Old locus tagGBA87_00035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WDOY01000001.1Sequence record reported by the local genomic context database.
Genomic interval6 595-7 878 nt1 284 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 595-8 567 ntGCF_009159495::NZ_WDOY01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009159495::NZ_WDOY01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WDOY01000001.1All displayed genes belong to this local TCS context.
Neighborhood span6 595-8 567 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 595 nt8 567 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GBA87_RS00035GCF_009159495#GBA87_RS00035
HKClassicCurrent focus
6 595-7 878 nt · Forward (+)
GBA87_RS00040GCF_009159495#GBA87_RS00040
RRNarL
7 875-8 567 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436635#DXD31_RS08630Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2200896
Simplified PFAM architecture for HKOC_2200896
PFAM domain coverage: 66 / 427 aa (15.5%)
1 aa427 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[194-259]
- Domain count: 1
- Matched identifier: HKOC_2200896
- Positioned domains: HisKA_3 194-259
Cluster members and taxonomy
Representative gene: GCF_003436635#DXD31_RS08630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_009159495
AssemblyASM915949v1 · Scaffoldhaploid
Genome composition2 327 549 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key