1 Response_reg#1
14-122 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:14:0.000000000000437:122:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GBA75_RS07515
Response regulator NarL family
Bifidobacterium bifidum · GCF_009078055
ClassRRTypeNarLLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009078055#GBA75_RS07515Stable P2CS identifier used across views.
GenomeGCF_009078055Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 226 aa (73.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
156-212 aa · 57 aa · 25.2% of protein
Raw token
HTH_LUXR:156:3.35e-16:212:57:58- Raw architecture: Response_reg:14:0.000000000000437:122:110:111#HTH_LUXR:156:3.35e-16:212:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009078055::NZ_WDON01000008.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span30320-31000Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGBA75_07515RefSeq proteinWP_151910080.1
Context group ID
GCF_009078055::NZ_WDON01000008.1::G00013Context members
GBA75_RS07515
Partner locus tags
GBA75_RS07515
Partner old locus tags
GBA75_07515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_151910080.1Primary protein accession used for annex mappings.
UniProt accessionA0A7J5TRI3Primary UniProt accession resolved in the annex database.
UniProt IDA0A7J5TRI3_BIFBIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGBA75_RS07515Primary locus identifier stored in the genes table.
Old locus tagGBA75_07515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WDON01000008.1Sequence record reported by the local genomic context database.
Genomic interval30 320-31 000 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 320-31 000 ntGCF_009078055::NZ_WDON01000008.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009078055::NZ_WDON01000008.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WDON01000008.1All displayed genes belong to this local TCS context.
Neighborhood span30 320-31 000 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 320 nt31 000 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GBA75_RS07515GCF_009078055#GBA75_RS07515
RRNarLCurrent focus
30 320-31 000 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009078055#GBA75_RS07515The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1425777
Simplified PFAM architecture for RROC_1425777
PFAM domain coverage: 162 / 226 aa (71.7%)
1 aa226 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[13-122] | GerE[160-211]
- Domain count: 2
- Matched identifier: RROC_1425777
- Positioned domains: Response_reg 13-122 ; Response_reg 13-122 ; GerE 160-211 ; GerE 160-211
Cluster members and taxonomy
Representative gene: GCF_009078055#GBA75_RS07515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_009078055
AssemblyASM907805v1 · Scaffoldhaploid
Genome composition2 168 244 bp · 63,0% GCBifidobacterium bifidum
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key