1 HisKA_3#1
252-316 aa · 65 aa · 7.2% of protein
Raw token
HisKA_3:252:5.84e-17:316:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS13740
Histidine kinase, Classic
Bifidobacterium myosotis · GCF_008698155
ClassHKTypeClassicLength901 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008698155#EMO91_RS13740Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length901 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage229 / 901 aa (25.4%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa901 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
357-449 aa · 93 aa · 10.3% of protein
Raw token
HATPase_c:357:0.000000000000248:449:108:1093 HisKA_3#3
800-870 aa · 71 aa · 7.9% of protein
Raw token
HisKA_3:800:0.00000125:870:71:68- Raw architecture: HisKA_3:252:5.84e-17:316:65:68#HATPase_c:357:0.000000000000248:449:108:109#HisKA_3:800:0.00000125:870:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008698155::NZ_RZUH01000008.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span36955-39660Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_008698155::NZ_RZUH01000008.1::G00027Context members
EMO91_RS13740
Partner locus tags
EMO91_RS13740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_223852162.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS13740Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_RZUH01000008.1Sequence record reported by the local genomic context database.
Genomic interval36 955-39 660 nt2 706 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 955-39 660 ntGCF_008698155::NZ_RZUH01000008.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000008.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000008.1All displayed genes belong to this local TCS context.
Neighborhood span36 955-39 660 nt2 706 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 955 nt39 660 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EMO91_RS13740GCF_008698155#EMO91_RS13740
HKClassicCurrent focus
36 955-39 660 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698155#EMO91_RS13740The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0404765
Simplified PFAM architecture for HKOC_0404765
PFAM domain coverage: 439 / 901 aa (48.7%)
1 aa901 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[25-151] | HisKA_3[252-316] | HATPase_c[358-448] | DUF7134[591-746]
- Domain count: 4
- Matched identifier: HKOC_0404765
- Positioned domains: DUF7134 25-151 ; HisKA_3 252-316 ; HATPase_c 358-448 ; DUF7134 591-746
Cluster members and taxonomy
Representative gene: GCF_008698155#EMO91_RS13740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key