1 Response_reg#1
6-108 aa · 103 aa · 47.5% of protein
Raw token
Response_reg:6:0.0000000000000145:108:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS00550
Response regulator NarL family
Bifidobacterium myosotis · GCF_008698155
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008698155#EMO91_RS00550Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 217 aa (73.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
154-209 aa · 56 aa · 25.8% of protein
Raw token
HTH_LUXR:154:0.00000000000000232:209:56:58- Raw architecture: Response_reg:6:0.0000000000000145:108:103:111#HTH_LUXR:154:0.00000000000000232:209:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008698155::NZ_RZUH01000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span138912-139565Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO91_00550RefSeq proteinWP_190972366.1
Context group ID
GCF_008698155::NZ_RZUH01000001.1::G00006Context members
EMO91_RS00550
Partner locus tags
EMO91_RS00550
Partner old locus tags
EMO91_00550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_190972366.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS00550Primary locus identifier stored in the genes table.
Old locus tagEMO91_00550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUH01000001.1Sequence record reported by the local genomic context database.
Genomic interval138 912-139 565 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span138 912-139 565 ntGCF_008698155::NZ_RZUH01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span138 912-139 565 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 912 nt139 565 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EMO91_RS00550GCF_008698155#EMO91_RS00550
RRNarLCurrent focus
138 912-139 565 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698155#EMO91_RS00550The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1856694
Simplified PFAM architecture for RROC_1856694
PFAM domain coverage: 162 / 217 aa (74.7%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-111] | GerE[154-209]
- Domain count: 2
- Matched identifier: RROC_1856694
- Positioned domains: Response_reg 6-111 ; Response_reg 6-111 ; GerE 154-209 ; GerE 154-209
Cluster members and taxonomy
Representative gene: GCF_008698155#EMO91_RS00550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key