1 Response_reg#1
20-121 aa · 102 aa · 42.0% of protein
Raw token
Response_reg:20:0.000000000000289:121:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS09650
Response regulator NarL family
Bifidobacterium myosotis · GCF_008698155
ClassRRTypeNarLLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_008698155#EMO91_RS09650Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 243 aa (64.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
182-236 aa · 55 aa · 22.6% of protein
Raw token
HTH_LUXR:182:3.18e-17:236:55:58- Raw architecture: Response_reg:20:0.000000000000289:121:102:111#HTH_LUXR:182:3.18e-17:236:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_008698155::NZ_RZUH01000007.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span108788-109519Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO91_09650RefSeq proteinWP_150379777.1
Context group ID
GCF_008698155::NZ_RZUH01000007.1::G00024Context members
EMO91_RS09650
Partner locus tags
EMO91_RS09650
Partner old locus tags
EMO91_09650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150379777.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9ZII1Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9ZII1_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS09650Primary locus identifier stored in the genes table.
Old locus tagEMO91_09650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUH01000007.1Sequence record reported by the local genomic context database.
Genomic interval108 788-109 519 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span108 788-109 519 ntGCF_008698155::NZ_RZUH01000007.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000007.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000007.1All displayed genes belong to this local TCS context.
Neighborhood span108 788-109 519 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 788 nt109 519 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
EMO91_RS09650GCF_008698155#EMO91_RS09650
RRNarLCurrent focus
108 788-109 519 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698155#EMO91_RS09650The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0831031
Simplified PFAM architecture for RROC_0831031
PFAM domain coverage: 156 / 243 aa (64.2%)
1 aa243 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[20-122] | GerE[183-235]
- Domain count: 2
- Matched identifier: RROC_0831031
- Positioned domains: Response_reg 20-122 ; Response_reg 20-122 ; GerE 183-235 ; GerE 183-235
Cluster members and taxonomy
Representative gene: GCF_008698155#EMO91_RS09650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key