1 HAMP#1
123-192 aa · 70 aa · 14.1% of protein
Raw token
HAMP:123:0.00000000174:192:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS09610
Histidine kinase, Classic
Bifidobacterium myosotis · GCF_008698155
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698155#EMO91_RS09610Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 498 aa (38.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation3 items
2 HisKA#2
197-261 aa · 65 aa · 13.1% of protein
Raw token
HisKA:197:0.000000000733:261:65:643 HATPase_c#3
433-489 aa · 57 aa · 11.4% of protein
Raw token
HATPase_c:433:0.00000234:489:57:109- Raw architecture: HAMP:123:0.00000000174:192:70:69#HisKA:197:0.000000000733:261:65:64#HATPase_c:433:0.00000234:489:57:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698155::NZ_RZUH01000007.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96657-98851Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO91_09610RefSeq proteinWP_150379749.1
Context group ID
GCF_008698155::NZ_RZUH01000007.1::G00023Context members
EMO91_RS09605EMO91_RS09610
Partner locus tags
EMO91_RS09605EMO91_RS09610
Partner old locus tags
EMO91_09605EMO91_09610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150379749.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9ZIF1Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9ZIF1_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS09610Primary locus identifier stored in the genes table.
Old locus tagEMO91_09610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUH01000007.1Sequence record reported by the local genomic context database.
Genomic interval97 355-98 851 nt1 497 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 657-98 851 ntGCF_008698155::NZ_RZUH01000007.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000007.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000007.1All displayed genes belong to this local TCS context.
Neighborhood span96 657-98 851 nt2 195 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 657 nt98 851 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO91_RS09605GCF_008698155#EMO91_RS09605
RROmpR
96 657-97 358 nt · Forward (+)
EMO91_RS09610GCF_008698155#EMO91_RS09610
HKClassicCurrent focus
97 355-98 851 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698155#EMO91_RS09610The current gene is the representative for this cluster.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1488927
Simplified PFAM architecture for HKOC_1488927
PFAM domain coverage: 64 / 498 aa (12.9%)
1 aa498 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[197-260]
- Domain count: 1
- Matched identifier: HKOC_1488927
- Positioned domains: HisKA 197-260
Cluster members and taxonomy
Representative gene: GCF_008698155#EMO91_RS09610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key