1 HisKA_3#1
171-230 aa · 60 aa · 15.5% of protein
Raw token
HisKA_3:171:0.000000000000195:230:62:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS06485
Histidine kinase, Classic
Bifidobacterium myosotis · GCF_008698155
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698155#EMO91_RS06485Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage140 / 386 aa (36.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa386 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
274-353 aa · 80 aa · 20.7% of protein
Raw token
HATPase_c:274:0.00000017:353:92:109- Raw architecture: HisKA_3:171:0.000000000000195:230:62:68#HATPase_c:274:0.00000017:353:92:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698155::NZ_RZUH01000004.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span206383-208277Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO91_06495RefSeq proteinWP_150379256.1
Context group ID
GCF_008698155::NZ_RZUH01000004.1::G00021Context members
EMO91_RS06480EMO91_RS06485
Partner locus tags
EMO91_RS06480EMO91_RS06485
Partner old locus tags
EMO91_06490EMO91_06495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150379256.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9ZKJ1Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9ZKJ1_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS06485Primary locus identifier stored in the genes table.
Old locus tagEMO91_06495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUH01000004.1Sequence record reported by the local genomic context database.
Genomic interval207 117-208 277 nt1 161 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span206 383-208 277 ntGCF_008698155::NZ_RZUH01000004.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000004.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span206 383-208 277 nt1 895 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
206 383 nt208 277 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO91_RS06480GCF_008698155#EMO91_RS06480
RRNarL
206 383-207 105 nt · Reverse (-)
EMO91_RS06485GCF_008698155#EMO91_RS06485
HKClassicCurrent focus
207 117-208 277 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698155#EMO91_RS06485The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2559554
Simplified PFAM architecture for HKOC_2559554
PFAM domain coverage: 60 / 386 aa (15.5%)
1 aa386 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[171-230]
- Domain count: 1
- Matched identifier: HKOC_2559554
- Positioned domains: HisKA_3 171-230
Cluster members and taxonomy
Representative gene: GCF_008698155#EMO91_RS06485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key