1 Response_reg#1
13-125 aa · 113 aa · 47.1% of protein
Raw token
Response_reg:13:5.4e-29:125:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS06480
Response regulator NarL family
Bifidobacterium myosotis · GCF_008698155
ClassRRTypeNarLLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698155#EMO91_RS06480Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 240 aa (71.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
179-236 aa · 58 aa · 24.2% of protein
Raw token
HTH_LUXR:179:1.62e-20:236:58:58- Raw architecture: Response_reg:13:5.4e-29:125:113:111#HTH_LUXR:179:1.62e-20:236:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698155::NZ_RZUH01000004.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span206383-208277Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO91_06490RefSeq proteinWP_150379255.1
Context group ID
GCF_008698155::NZ_RZUH01000004.1::G00021Context members
EMO91_RS06480EMO91_RS06485
Partner locus tags
EMO91_RS06480EMO91_RS06485
Partner old locus tags
EMO91_06490EMO91_06495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150379255.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9ZL80Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9ZL80_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS06480Primary locus identifier stored in the genes table.
Old locus tagEMO91_06490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUH01000004.1Sequence record reported by the local genomic context database.
Genomic interval206 383-207 105 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span206 383-208 277 ntGCF_008698155::NZ_RZUH01000004.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000004.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span206 383-208 277 nt1 895 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
206 383 nt208 277 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO91_RS06480GCF_008698155#EMO91_RS06480
RRNarLCurrent focus
206 383-207 105 nt · Reverse (-)
EMO91_RS06485GCF_008698155#EMO91_RS06485
HKClassic
207 117-208 277 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698155#EMO91_RS06480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0890231
Simplified PFAM architecture for RROC_0890231
PFAM domain coverage: 168 / 240 aa (70.0%)
1 aa240 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[13-125] | GerE[182-236]
- Domain count: 2
- Matched identifier: RROC_0890231
- Positioned domains: Response_reg 13-125 ; Response_reg 13-125 ; GerE 182-236 ; GerE 182-236
Cluster members and taxonomy
Representative gene: GCF_008698155#EMO91_RS06480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key