1 Response_reg#1
3-113 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:3:1.59e-30:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS06205
Response regulator OmpR family
Bifidobacterium myosotis · GCF_008698155
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698155#EMO91_RS06205Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-222 aa · 71 aa · 31.8% of protein
Raw token
Trans_reg_C:152:0.00000000000000245:222:75:77- Raw architecture: Response_reg:3:1.59e-30:113:111:111#Trans_reg_C:152:0.00000000000000245:222:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698155::NZ_RZUH01000004.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span143551-145775Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO91_06215RefSeq proteinWP_094668371.1
Context group ID
GCF_008698155::NZ_RZUH01000004.1::G00020Context members
EMO91_RS06200EMO91_RS06205
Partner locus tags
EMO91_RS06200EMO91_RS06205
Partner old locus tags
EMO91_06210EMO91_06215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_094668371.1Primary protein accession used for annex mappings.
UniProt accessionA0A261FE67Primary UniProt accession resolved in the annex database.
UniProt IDA0A261FE67_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS06205Primary locus identifier stored in the genes table.
Old locus tagEMO91_06215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUH01000004.1Sequence record reported by the local genomic context database.
Genomic interval145 104-145 775 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span143 551-145 775 ntGCF_008698155::NZ_RZUH01000004.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000004.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span143 551-145 775 nt2 225 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 551 nt145 775 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO91_RS06200GCF_008698155#EMO91_RS06200
HKClassic
143 551-145 107 nt · Reverse (-)
EMO91_RS06205GCF_008698155#EMO91_RS06205
RROmpRCurrent focus
145 104-145 775 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002259745#BMYO_RS10270Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1596900
Simplified PFAM architecture for RROC_1596900
PFAM domain coverage: 182 / 223 aa (81.6%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[152-222]
- Domain count: 2
- Matched identifier: RROC_1596900
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 152-222 ; Trans_reg_C 152-222
Cluster members and taxonomy
Representative gene: GCF_002259745#BMYO_RS10270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key