1 Response_reg#1
3-112 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:3:1.6e-30:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS06155
Response regulator OmpR family
Bifidobacterium myosotis · GCF_008698155
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698155#EMO91_RS06155Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 237 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 31.6% of protein
Raw token
Trans_reg_C:155:2e-27:229:75:77- Raw architecture: Response_reg:3:1.6e-30:112:111:111#Trans_reg_C:155:2e-27:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698155::NZ_RZUH01000004.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span129536-133296Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO91_06165RefSeq proteinWP_094668363.1
Context group ID
GCF_008698155::NZ_RZUH01000004.1::G00019Context members
EMO91_RS06150EMO91_RS06155
Partner locus tags
EMO91_RS06150EMO91_RS06155
Partner old locus tags
EMO91_06160EMO91_06165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_094668363.1Primary protein accession used for annex mappings.
UniProt accessionA0A261FE78Primary UniProt accession resolved in the annex database.
UniProt IDA0A261FE78_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS06155Primary locus identifier stored in the genes table.
Old locus tagEMO91_06165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUH01000004.1Sequence record reported by the local genomic context database.
Genomic interval132 583-133 296 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span129 536-133 296 ntGCF_008698155::NZ_RZUH01000004.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000004.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span129 536-133 296 nt3 761 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 536 nt133 296 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO91_RS06150GCF_008698155#EMO91_RS06150
HKClassic
129 536-132 568 nt · Forward (+)
EMO91_RS06155GCF_008698155#EMO91_RS06155
RROmpRCurrent focus
132 583-133 296 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002259745#BMYO_RS10220Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0966682
Simplified PFAM architecture for RROC_0966682
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_0966682
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 155-229 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_002259745#BMYO_RS10220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key