1 KdpD#1
4-213 aa · 210 aa · 20.8% of protein
Raw token
KdpD:4:1.61e-126:213:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EMO91_RS06150
Histidine kinase, Classic
Bifidobacterium myosotis · GCF_008698155
ClassHKTypeClassicLength1010 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698155#EMO91_RS06150Stable P2CS identifier used across views.
GenomeGCF_008698155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length1010 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage388 / 1010 aa (38.4%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1010 aa
Domain-by-domain annotation3 items
2 HisKA#2
622-689 aa · 68 aa · 6.7% of protein
Raw token
HisKA:622:0.000000000106:689:68:643 HATPase_c#3
731-840 aa · 110 aa · 10.9% of protein
Raw token
HATPase_c:731:1.19e-23:840:110:109- Raw architecture: KdpD:4:1.61e-126:213:210:210#HisKA:622:0.000000000106:689:68:64#HATPase_c:731:1.19e-23:840:110:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698155::NZ_RZUH01000004.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span129536-133296Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEMO91_06160RefSeq proteinWP_150379214.1
Context group ID
GCF_008698155::NZ_RZUH01000004.1::G00019Context members
EMO91_RS06150EMO91_RS06155
Partner locus tags
EMO91_RS06150EMO91_RS06155
Partner old locus tags
EMO91_06160EMO91_06165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_150379214.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9ZKH8Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9ZKH8_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEMO91_RS06150Primary locus identifier stored in the genes table.
Old locus tagEMO91_06160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUH01000004.1Sequence record reported by the local genomic context database.
Genomic interval129 536-132 568 nt3 033 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span129 536-133 296 ntGCF_008698155::NZ_RZUH01000004.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698155::NZ_RZUH01000004.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUH01000004.1All displayed genes belong to this local TCS context.
Neighborhood span129 536-133 296 nt3 761 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 536 nt133 296 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EMO91_RS06150GCF_008698155#EMO91_RS06150
HKClassicCurrent focus
129 536-132 568 nt · Forward (+)
EMO91_RS06155GCF_008698155#EMO91_RS06155
RROmpR
132 583-133 296 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698155#EMO91_RS06150The current gene is the representative for this cluster.
PFAM architectureKdpD + Usp + DUF4118 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0283839
Simplified PFAM architecture for HKOC_0283839
PFAM domain coverage: 605 / 1010 aa (59.9%)
1 aa1010 aa
KdpDUspDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + Usp + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[5-213] | Usp[234-349] | DUF4118[386-490] | HisKA[623-689] | HATPase_c[732-839]
- Domain count: 5
- Matched identifier: HKOC_0283839
- Positioned domains: KdpD 5-213 ; Usp 234-349 ; DUF4118 386-490 ; HisKA 623-689 ; HATPase_c 732-839
Cluster members and taxonomy
Representative gene: GCF_008698155#EMO91_RS06150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 166 · GCF_008698155
AssemblyASM869815v1 · Scaffoldhaploid
Genome composition3 275 217 bp · 63,0% GCBifidobacterium myosotis
Signal transduction countsGenes 48 · HK 18 · RR 26CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key